Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 2.7e-103 378.6 187 100.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.2e-56 222.2 186 66.1
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.2e-55 220.3 184 66.3
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 3.6e-55 218.8 186 66.7
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.1e-55 218.0 184 66.3
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.3e-54 216.1 184 64.7
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.2e-54 214.9 184 65.2
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.2e-54 214.9 184 65.2
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.2e-54 214.9 184 65.2
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 8.8e-54 214.2 184 65.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.5e-53 213.4 186 64.0
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.5e-53 213.4 189 64.6
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.5e-53 213.4 187 64.2
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.5e-53 213.4 186 64.0
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.0e-53 213.0 189 63.5
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-53 213.0 183 63.9
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.0e-53 213.0 184 63.6
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.0e-53 213.0 183 63.9
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 2.6e-53 212.6 184 66.3
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.4e-53 212.2 183 63.4
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.4e-53 211.8 186 62.9
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 5.7e-53 211.5 184 64.1
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.7e-53 211.5 183 63.9
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.7e-53 211.5 184 62.5
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 5.7e-53 211.5 186 63.4
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 7.5e-53 211.1 184 63.6
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-52 210.3 183 62.8
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.3e-52 210.3 184 63.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.7e-52 209.9 186 62.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.7e-52 209.9 181 64.1
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.7e-52 209.9 183 62.8
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.7e-52 209.9 184 64.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.7e-52 209.9 186 64.0
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 2.8e-52 209.1 186 62.9
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 2.8e-52 209.1 183 62.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.8e-52 208.4 184 64.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.8e-52 208.4 181 63.5
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.8e-52 208.4 181 63.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 4.8e-52 208.4 191 63.4
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.3e-52 208.0 171 66.1
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 8.3e-52 207.6 187 63.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.1e-51 207.2 188 63.3
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.1e-51 207.2 187 62.0
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.1e-51 207.2 185 62.2
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.1e-51 207.2 191 61.3
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.4e-51 206.8 184 63.6
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.4e-51 206.8 166 68.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.4e-51 206.8 184 64.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.8e-51 206.5 215 55.3
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.4e-51 206.1 184 62.0
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.4e-51 206.1 185 61.6
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 4.1e-51 205.3 187 61.5
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 5.4e-51 204.9 184 62.5
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 5.4e-51 204.9 191 60.7
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 9.1e-51 204.1 189 61.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.6e-50 203.4 187 60.4
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.6e-50 203.4 183 63.4
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.0e-50 203.0 186 59.7
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.5e-50 202.2 187 59.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.5e-50 202.2 185 62.2
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 4.5e-50 201.8 184 63.0
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.9e-50 201.4 184 60.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 5.9e-50 201.4 184 60.3
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 5.9e-50 201.4 184 60.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.2e-49 199.5 187 58.8
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.2e-49 199.5 184 58.7
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.2e-49 199.5 169 63.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.9e-49 199.1 186 61.3
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.8e-49 198.7 184 63.0
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 5.0e-49 198.4 185 60.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 5.0e-49 198.4 184 59.8
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 8.5e-49 197.6 187 58.3
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 8.5e-49 197.6 187 59.4
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 8.5e-49 197.6 187 59.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 8.5e-49 197.6 184 62.0
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 8.5e-49 197.6 175 62.9
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.1e-48 197.2 184 59.8
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.1e-48 197.2 210 57.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.9e-48 196.4 183 60.1
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-48 196.4 172 61.0
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-48 196.4 172 61.0
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.9e-48 196.4 172 61.0
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.9e-48 196.4 187 57.2
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.9e-48 196.4 187 58.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.5e-48 196.1 174 63.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.5e-48 196.1 187 57.8
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.2e-48 195.7 173 60.7
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.2e-48 195.7 187 57.8
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.2e-48 195.7 187 57.2
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.2e-48 195.7 228 53.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 4.2e-48 195.3 170 61.2
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 4.2e-48 195.3 175 60.6
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 4.2e-48 195.3 170 61.2
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 4.2e-48 195.3 189 57.7
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.2e-48 195.3 188 59.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 5.5e-48 194.9 182 58.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 5.5e-48 194.9 187 57.2
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 5.5e-48 194.9 184 58.7
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 7.2e-48 194.5 185 59.5
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 9.4e-48 194.1 185 58.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.6e-47 193.4 190 59.5
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.6e-47 193.4 187 57.2
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 4.7e-47 191.8 187 57.8
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 6.1e-47 191.4 166 61.4
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 6.1e-47 191.4 178 60.1
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.8e-46 189.9 183 57.4
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.4e-45 185.3 184 57.1
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-44 183.7 165 61.8
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.7e-44 183.3 170 59.4
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.2e-44 183.0 235 47.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.4e-43 180.3 271 42.8
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.1e-43 179.1 171 57.9
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.0e-41 174.1 183 53.0
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.8e-41 172.2 183 53.0
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 7.2e-40 167.9 158 58.9
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.0e-38 164.1 144 62.5
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.9e-36 156.0 117 65.0
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 9.2e-35 151.0 116 62.1
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.4e-30 137.1 116 60.3
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.3e-30 136.3 152 52.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.2e-29 134.0 184 46.2
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 3.2e-27 125.9 107 62.6
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.0e-26 121.7 103 61.2
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 7.8e-26 121.3 165 41.8
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 5.0e-25 118.6 106 58.5
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.6e-23 113.6 102 57.8
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 4.7e-23 112.1 107 57.0
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 6.2e-23 111.7 60 90.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 8.1e-23 111.3 104 57.7
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.4e-22 110.5 110 54.5
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.8e-22 110.2 175 38.3
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 4.0e-22 109.0 106 54.7
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.6e-21 106.3 59 86.4
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.5e-21 104.8 101 54.5
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.8e-21 104.4 106 50.9
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 3.7e-20 102.4 63 76.2
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 3.7e-20 102.4 63 76.2
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 6.4e-20 101.7 77 67.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.4e-19 100.5 63 79.4
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.4e-19 99.8 63 74.6
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.3e-17 94.0 90 52.2
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.8e-14 83.6 91 52.7
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.8e-14 83.6 104 50.0
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 5.2e-14 82.0 110 38.2
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.0e-13 80.1 92 42.4
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 2.6e-13 79.7 47 78.7
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.3e-12 77.4 114 35.1
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 7.1e-11 71.6 137 30.7
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.0e-09 67.8 112 35.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 7.3e-08 61.6 126 29.4
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.4e-06 56.6 32 84.4


User provided reference genes

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