Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C52T0 Lonicera japonica HOM05D000001 ORTHO05D011545 1.9e-89 332.4 161 100.0
Lj9C253T5 Lonicera japonica HOM05D000001 ORTHO05D010340 1.0e-13 80.9 216 28.2
Glyma.02G223800 Glycine max HOM05D000001 ORTHO05D010340 6.5e-13 78.2 218 26.6
Cc02_g23780 Coffea canephora HOM05D000001 ORTHO05D010340 7.2e-12 74.7 215 25.1
Medtr7g078360 Medicago truncatula HOM05D000001 ORTHO05D010340 8.0e-11 71.2 55 54.5
Medtr7g078420 Medicago truncatula HOM05D000001 ORTHO05D010340 8.0e-11 71.2 55 54.5
Psat1g223640 Pisum sativum HOM05D000001 ORTHO05D010340 1.0e-10 70.9 57 52.6
CiPaw.05G000900 Carya illinoinensis HOM05D000001 ORTHO05D010340 2.3e-10 69.7 218 27.1
Hma1.2p1_0157F.1_g069200 Hydrangea macrophylla HOM05D000001 ORTHO05D010340 5.2e-10 68.6 54 55.6
Prupe.1G586800 Prunus persica HOM05D000001 ORTHO05D010340 5.2e-10 68.6 58 51.7
Actinidia00139 Actinidia chinensis HOM05D000001 ORTHO05D010340 8.8e-10 67.8 53 56.6
A06p10500 Brassica napus HOM05D000001 ORTHO05D011545 1.1e-09 67.4 119 33.6
DCAR_003271 Daucus carota HOM05D000001 ORTHO05D010340 1.1e-09 67.4 53 56.6
TPR.G30665 Trifolium pratense HOM05D000001 ORTHO05D010340 1.5e-09 67.0 94 40.4
Duzib235G0779 Durio zibethinus HOM05D000001 ORTHO05D010340 2.0e-09 66.6 91 38.5
Phvul.006G221900 Phaseolus vulgaris HOM05D000001 ORTHO05D010340 2.0e-09 66.6 69 47.8
Ca_00442_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010340 5.7e-09 65.1 70 47.1
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 7.4e-09 64.7 115 30.4
Dinv29652 Davidia involucrata HOM05D000001 ORTHO05D010340 9.7e-09 64.3 114 39.5
HanXRQChr03g0072881 Helianthus annuus HOM05D000001 ORTHO05D010340 9.7e-09 64.3 51 54.9
Sopen01g045190 Solanum pennellii HOM05D000001 ORTHO05D010340 1.3e-08 63.9 51 54.9
PGSC0003DMG400038566 Solanum tuberosum HOM05D000001 ORTHO05D010340 1.3e-08 63.9 51 54.9
AagrBONN_evm.TU.Sc2ySwM_228.131 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-08 63.2 122 29.5
Thecc.06G063400 Theobroma cacao HOM05D000001 ORTHO05D010340 2.2e-08 63.2 217 23.0
Lalb_Chr20g0122421 Lupinus albus HOM05D000001 ORTHO05D010340 2.8e-08 62.8 55 50.9
QL02p103708 Quercus lobata HOM05D000001 ORTHO05D010340 2.8e-08 62.8 43 62.8
Nitab4.5_0001595g0040 Nicotiana tabacum HOM05D000001 ORTHO05D283424 4.8e-08 62.0 118 33.1
Solyc01g102790.3 Solanum lycopersicum HOM05D000001 ORTHO05D010340 4.8e-08 62.0 51 52.9
MELO3C015886.2 Cucumis melo HOM05D000001 ORTHO05D000003 6.3e-08 61.6 154 24.7
Lj3C87T3 Lonicera japonica HOM05D000001 ORTHO05D000003 6.3e-08 61.6 150 27.3
HanXRQChr14g0457591 Helianthus annuus HOM05D000001 ORTHO05D000003 8.2e-08 61.2 149 28.9
Os08g0375800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 8.2e-08 61.2 146 24.7
EL10Ac6g13958 Beta vulgaris HOM05D000001 ORTHO05D010340 1.1e-07 60.8 44 59.1
TAR375G0941 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.1e-07 60.8 154 24.7
PGR142G0409 Punica granatum HOM05D000001 ORTHO05D010340 1.4e-07 60.5 67 44.8
Glyma.14G190532 Glycine max HOM05D000001 ORTHO05D011545 1.8e-07 60.1 65 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5000 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-07 59.7 179 25.1
BcaB02g06497 Brassica carinata HOM05D000001 ORTHO05D011545 2.4e-07 59.7 58 44.8
Cc11_g05050 Coffea canephora HOM05D000001 ORTHO05D000003 2.4e-07 59.7 105 30.5
FAN08G1609 Fragaria x ananassa HOM05D000001 ORTHO05D011545 2.4e-07 59.7 43 55.8
Glyma.14G190466 Glycine max HOM05D000001 ORTHO05D011014 2.4e-07 59.7 145 28.3
Lj3g0020944 Lotus japonicus HOM05D000001 ORTHO05D010340 2.4e-07 59.7 55 47.3
Os03g0644200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 2.4e-07 59.7 152 27.0
ClCG06G009020 Citrullus lanatus HOM05D000001 ORTHO05D010435 3.1e-07 59.3 124 27.4
Dinv37641 Davidia involucrata HOM05D000001 ORTHO05D022507 3.1e-07 59.3 148 25.7
Thhalv10009648m.g Eutrema salsugineum HOM05D000001 ORTHO05D010340 3.1e-07 59.3 116 27.6
Lj6g0016342 Lotus japonicus HOM05D000001 ORTHO05D009952 3.1e-07 59.3 171 24.0
Nn6g33444 Nelumbo nucifera HOM05D000001 ORTHO05D022507 3.1e-07 59.3 148 26.4
Peaxi162Scf00194g00103 Petunia axillaris HOM05D000001 ORTHO05D010340 3.1e-07 59.3 46 50.0
Sed0019771 Sechium edule HOM05D000001 ORTHO05D000003 3.1e-07 59.3 144 26.4
Nn5g29934 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.1e-07 58.9 149 28.9
PGSC0003DMG400026038 Solanum tuberosum HOM05D000001 ORTHO05D000003 4.1e-07 58.9 143 25.2
CSS0011746 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 5.3e-07 58.5 150 24.7
AagrBONN_evm.TU.Sc2ySwM_368.2384 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-07 58.2 126 30.2
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 7.0e-07 58.2 127 29.9
Dinv18077 Davidia involucrata HOM05D000001 ORTHO05D009340 7.0e-07 58.2 118 30.5
MD12G1068000 Malus domestica HOM05D000001 ORTHO05D009340 7.0e-07 58.2 140 25.7
MD13G1127800 Malus domestica HOM05D000001 ORTHO05D000003 7.0e-07 58.2 148 26.4
Manes.08G048700 Manihot esculenta HOM05D000001 ORTHO05D009340 7.0e-07 58.2 115 33.0
Prupe.1G218200 Prunus persica HOM05D000001 ORTHO05D000003 7.0e-07 58.2 148 27.0
Zm00001eb025700 Zea mays HOM05D000001 ORTHO05D000003 7.0e-07 58.2 146 24.7
AagrBONN_evm.TU.Sc2ySwM_117.1270 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.1e-07 57.8 154 26.6
CSS0007422 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.1e-07 57.8 150 24.7
CSS0042631 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.1e-07 57.8 128 28.1
ECA238G0613 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.1e-07 57.8 156 28.8
FAN04G1465 Fragaria x ananassa HOM05D000001 ORTHO05D010340 9.1e-07 57.8 40 60.0
MBI04_g17073_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009340 9.1e-07 57.8 53 45.3
Nitab4.5_0002510g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009340 9.1e-07 57.8 115 31.3
Actinidia15634 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.2e-06 57.4 109 29.4
AagrBONN_evm.TU.Sc2ySwM_228.2884 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 57.4 148 28.4
AagrBONN_evm.TU.Sc2ySwM_368.2132 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 57.4 155 24.5
AagrBONN_evm.TU.Sc2ySwM_369.47 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 57.4 119 25.2
FvH4_5g24641 Fragaria vesca HOM05D000001 ORTHO05D000003 1.2e-06 57.4 148 27.0
Hma1.2p1_0792F.1_g218560 Hydrangea macrophylla HOM05D000001 ORTHO05D022507 1.2e-06 57.4 148 26.4
Lsat_1_v5_gn_5_98641 Lactuca sativa HOM05D000001 ORTHO05D000003 1.2e-06 57.4 156 26.9
AagrBONN_evm.TU.Sc2ySwM_228.260 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.0 150 26.7
AagrBONN_evm.TU.Sc2ySwM_228.5220 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.0 126 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2793 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.0 147 27.2
AagrBONN_evm.TU.Sc2ySwM_368.2803 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.0 163 25.8
AagrBONN_evm.TU.Sc2ySwM_369.154 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.0 144 25.0
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.6e-06 57.0 77 37.7
Carub.0003s2069 Capsella rubella HOM05D000001 ORTHO05D000003 1.6e-06 57.0 147 24.5
FAN13G1183 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-06 57.0 148 27.0
FAN13G1225 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-06 57.0 148 27.0
Lj3g0018345 Lotus japonicus HOM05D000001 ORTHO05D000003 1.6e-06 57.0 117 29.1
MBI04_g42208_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.6e-06 57.0 168 26.8
MBI04_g46760_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.6e-06 57.0 168 26.8
RcHm_v2.0_Chr7g0218681 Rosa chinensis HOM05D000001 ORTHO05D010340 1.6e-06 57.0 40 57.5
AagrBONN_evm.TU.Sc2ySwM_117.4202 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 56.6 113 29.2
AagrBONN_evm.TU.Sc2ySwM_362.699 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 56.6 155 23.9
AagrBONN_evm.TU.Sc2ySwM_368.3255 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 56.6 145 24.8
Haze_09961 Corylus avellana HOM05D000001 ORTHO05D010340 2.0e-06 56.6 44 59.1
Eucgr.H00396 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.0e-06 56.6 117 26.5
FAN08G2759 Fragaria x ananassa HOM05D002906 ORTHO05D000003 2.0e-06 56.6 148 27.0
Lj9C61G0 Lonicera japonica HOM05D000001 ORTHO05D011545 2.0e-06 56.6 43 53.5
Sc03g0005730 Simmondsia chinensis HOM05D000001 ORTHO05D011014 2.0e-06 56.6 107 32.7
TAR383G0199 Trochodendron aralioides HOM05D000001 ORTHO05D010694 2.0e-06 56.6 155 27.7
AagrBONN_evm.TU.Sc2ySwM_344.1855 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-06 56.2 140 25.7
FvH4_4g22970 Fragaria vesca HOM05D000001 ORTHO05D000003 2.6e-06 56.2 148 29.1
Hma1.2p1_0465F.1_g158480 Hydrangea macrophylla HOM05D000001 ORTHO05D009340 2.6e-06 56.2 140 26.4
AagrBONN_evm.TU.Sc2ySwM_228.5006 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 55.8 152 25.0
AagrBONN_evm.TU.Sc2ySwM_344.2277 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 55.8 143 28.0
AagrBONN_evm.TU.Sc2ySwM_344.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 55.8 120 30.0
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 55.8 142 26.8
CSS0002292 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 3.5e-06 55.8 128 27.3
CSS0025930 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 3.5e-06 55.8 128 27.3
Dinv33815 Davidia involucrata HOM05D000001 ORTHO05D000003 3.5e-06 55.8 178 25.3
Duzib268G1461 Durio zibethinus HOM05D000001 ORTHO05D000003 3.5e-06 55.8 126 28.6
Migut.H01698 Erythranthe guttata HOM05D000001 ORTHO05D000003 3.5e-06 55.8 151 23.8
FvH4_5g27410 Fragaria vesca HOM05D000001 ORTHO05D010340 3.5e-06 55.8 40 55.0
FAN12G2372 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.5e-06 55.8 148 28.4
FAN13G3145 Fragaria x ananassa HOM05D000001 ORTHO05D010340 3.5e-06 55.8 40 55.0
FAN18G4388 Fragaria x ananassa HOM05D000001 ORTHO05D010340 3.5e-06 55.8 40 55.0
MBI04_g40473_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 3.5e-06 55.8 150 25.3
Nitab4.5_0000220g0110 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.5e-06 55.8 152 25.7
PSO017G1824 Papaver somniferum HOM05D000001 ORTHO05D000003 3.5e-06 55.8 118 33.1
Potri.016G053500 Populus trichocarpa HOM05D000001 ORTHO05D009340 3.5e-06 55.8 53 45.3
Rhsim11G0115100 Rhododendron simsii HOM05D000001 ORTHO05D010340 3.5e-06 55.8 45 53.3
Atru.chr1.1046 Acer truncatum HOM05D000001 ORTHO05D009340 4.5e-06 55.5 140 27.1
AagrBONN_evm.TU.Sc2ySwM_228.112 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 143 25.9
AagrBONN_evm.TU.Sc2ySwM_228.3261 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 148 24.3
AagrBONN_evm.TU.Sc2ySwM_344.1390 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 145 27.6
AagrBONN_evm.TU.Sc2ySwM_344.3539 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 154 24.7
AagrBONN_evm.TU.Sc2ySwM_344.5590__5591 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 150 26.7
AagrBONN_evm.TU.Sc2ySwM_362.1977 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 148 25.7
A06p37740 Brassica napus HOM05D000001 ORTHO05D000003 4.5e-06 55.5 117 26.5
MELO3C030996.2 Cucumis melo HOM05D000001 ORTHO05D009340 4.5e-06 55.5 56 42.9
CsaV3_3G039270 Cucumis sativus L. HOM05D000001 ORTHO05D009340 4.5e-06 55.5 56 42.9
Eucgr.J02516 Eucalyptus grandis HOM05D000001 ORTHO05D009340 4.5e-06 55.5 50 46.0
FAN17G1545 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-06 55.5 148 28.4
MBI04_g43363_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.5e-06 55.5 149 24.2
Nn5g27125 Nelumbo nucifera HOM05D000001 ORTHO05D010340 4.5e-06 55.5 44 50.0
Nitab4.5_0010669g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009340 4.5e-06 55.5 115 30.4
RcHm_v2.0_Chr4g0429241 Rosa chinensis HOM05D000001 ORTHO05D000003 4.5e-06 55.5 148 28.4
SEGI_40627 Sequoiadendron giganteum HOM05D000001 ORTHO05D018317 4.5e-06 55.5 113 34.5
HPP92_025385 Vanilla planifolia HOM05D000001 ORTHO05D000003 4.5e-06 55.5 107 35.5
Atru.chr11.2412 Acer truncatum HOM05D000001 ORTHO05D000003 5.9e-06 55.1 148 25.7
AagrBONN_evm.TU.Sc2ySwM_117.2859 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 55.1 146 25.3
AagrBONN_evm.TU.Sc2ySwM_228.1750 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 55.1 154 23.4
AagrBONN_evm.TU.Sc2ySwM_228.2749 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 55.1 155 23.2
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 5.9e-06 55.1 162 25.3
AagrBONN_evm.TU.Sc2ySwM_344.64 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 55.1 154 24.7
AagrBONN_evm.TU.Sc2ySwM_362.334 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 55.1 148 26.4
AagrBONN_evm.TU.Sc2ySwM_368.667 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 55.1 107 28.0
Aqoxy3G02796 Aquilegia oxysepala HOM05D000001 ORTHO05D009340 5.9e-06 55.1 145 25.5
AT1G14470 Arabidopsis thaliana HOM05D000001 ORTHO05D010340 5.9e-06 55.1 60 36.7
MSTRG.11793 Avicennia marina HOM05D000001 ORTHO05D000003 5.9e-06 55.1 150 23.3
Carub.0001s1419 Capsella rubella HOM05D000001 ORTHO05D010340 5.9e-06 55.1 60 40.0
Cfa004421 Carpinus fangiana HOM05D000001 ORTHO05D010340 5.9e-06 55.1 44 56.8
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.9e-06 55.1 155 24.5
Os02g0735800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 5.9e-06 55.1 118 26.3
Peaxi162Scf00650g00016 Petunia axillaris HOM05D015093 ORTHO05D009340 5.9e-06 55.1 53 45.3
Peaxi162Scf00676g00022 Petunia axillaris HOM05D000001 ORTHO05D000003 5.9e-06 55.1 147 25.9
Hund06070 Selenicereus undatus HOM05D000001 ORTHO05D010340 5.9e-06 55.1 55 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2465 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 54.7 155 25.2
AagrBONN_evm.TU.Sc2ySwM_228.3013 Anthoceros agrestis HOM05D000001 ORTHO05D009083 7.7e-06 54.7 148 25.7
AagrBONN_evm.TU.Sc2ySwM_344.27 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 54.7 153 22.2
AagrBONN_evm.TU.Sc2ySwM_362.266 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 54.7 196 21.9
AagrBONN_evm.TU.Sc2ySwM_368.1202 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 54.7 150 24.0
CiPaw.07G142100 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.7e-06 54.7 151 23.8
Glyma.06G040000 Glycine max HOM05D000001 ORTHO05D000003 7.7e-06 54.7 169 22.5
Gohir.A05G230600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.7e-06 54.7 117 29.9
Gorai.009G241200 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.7e-06 54.7 146 26.0
Lju1295C4G4 Lonicera japonica HOM05D000001 ORTHO05D011014 7.7e-06 54.7 39 59.0
MD15G1083200 Malus domestica HOM05D000001 ORTHO05D000003 7.7e-06 54.7 147 25.2
PGR042G0138 Punica granatum HOM05D000001 ORTHO05D000003 7.7e-06 54.7 129 29.5
SHI01750 Sapria himalayana HOM05D000001 ORTHO05D010094 7.7e-06 54.7 145 24.8


User provided reference genes

Program Settings