Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C528G10 Lonicera japonica HOM05D000072 ORTHO05D000318 6.8e-43 176.8 82 100.0
Lj9C528T6 Lonicera japonica HOM05D000072 ORTHO05D000026 4.0e-35 151.0 76 90.8
Lj2C440G3 Lonicera japonica HOM05D000072 ORTHO05D000318 2.6e-34 148.3 76 89.5
Lj9C528T10 Lonicera japonica HOM05D000072 ORTHO05D000026 9.9e-26 119.8 74 73.0
Lj2C440G9 Lonicera japonica HOM05D000072 ORTHO05D000026 3.8e-25 117.9 75 70.7
Lj2A439G34 Lonicera japonica HOM05D000260 ORTHO05D000318 2.4e-19 98.6 60 71.7
Lj9C529G2 Lonicera japonica HOM05D000260 ORTHO05D000318 2.4e-19 98.6 60 71.7
Lj9A528T40 Lonicera japonica HOM05D000260 ORTHO05D000318 1.5e-18 95.9 61 67.2
Dinv34805 Davidia involucrata HOM05D000260 ORTHO05D000318 1.8e-14 82.4 71 49.3
Lj4C190G2 Lonicera japonica HOM05D000260 ORTHO05D000318 3.0e-14 81.6 56 62.5
Lj4C188T2 Lonicera japonica HOM05D000260 ORTHO05D000318 5.1e-14 80.9 56 62.5
Dinv33960 Davidia involucrata HOM05D000260 ORTHO05D000318 1.9e-13 79.0 71 54.9
CsaV3_2G033790 Cucumis sativus L. HOM05D000260 ORTHO05D000318 4.0e-11 71.2 56 53.6
Oeu036851.1 Olea europaea HOM05D000260 ORTHO05D000318 4.0e-11 71.2 57 54.4
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 4.0e-11 71.2 80 41.2
HanXRQChr11g0325091 Helianthus annuus HOM05D000260 ORTHO05D000318 2.0e-10 68.9 78 42.3
Manes.02G070200 Manihot esculenta HOM05D000072 ORTHO05D000026 2.0e-10 68.9 88 39.8
Potri.004G096900 Populus trichocarpa HOM05D000260 ORTHO05D000318 2.0e-10 68.9 73 43.8
Medtr7g082533 Medicago truncatula HOM05D000260 ORTHO05D000318 3.4e-10 68.2 57 45.6
Cc07_g08650 Coffea canephora HOM05D000072 ORTHO05D000026 4.5e-10 67.8 71 46.5
Potri.017G118250 Populus trichocarpa HOM05D000260 ORTHO05D000318 4.5e-10 67.8 76 40.8
SGA_v2.0_scaffold49G18115 Striga asiatica HOM05D000260 ORTHO05D000318 5.8e-10 67.4 69 46.4
ClCG11G007790 Citrullus lanatus HOM05D000260 ORTHO05D000318 1.0e-09 66.6 55 49.1
Potri.004G096675 Populus trichocarpa HOM05D000260 ORTHO05D000318 1.0e-09 66.6 52 55.8
MD17G1247800 Malus domestica HOM05D000260 ORTHO05D000318 1.7e-09 65.9 73 39.7
Ca_08086_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 2.2e-09 65.5 75 38.7
Dinv34800 Davidia involucrata HOM05D000260 ORTHO05D000318 2.2e-09 65.5 50 52.0
Oeu016632.1 Olea europaea HOM05D000072 ORTHO05D000026 2.2e-09 65.5 64 46.9
Gohir.D12G053400 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.9e-09 65.1 70 38.6
HanXRQChr11g0325411 Helianthus annuus HOM05D000072 ORTHO05D000026 2.9e-09 65.1 78 39.7
Lsat_1_v5_gn_4_155920 Lactuca sativa HOM05D000072 ORTHO05D000026 2.9e-09 65.1 61 50.8
MD00G1204100 Malus domestica HOM05D000260 ORTHO05D000318 2.9e-09 65.1 69 43.5
Lsat_1_v5_gn_4_154280 Lactuca sativa HOM05D000260 ORTHO05D000318 3.8e-09 64.7 76 44.7
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 5.0e-09 64.3 74 43.2
HanXRQChr11g0330681 Helianthus annuus HOM05D000072 ORTHO05D000026 5.0e-09 64.3 62 48.4
Lj9C528T1 Lonicera japonica HOM05D000072 ORTHO05D000026 5.0e-09 64.3 87 48.3
Manes.01G112000 Manihot esculenta HOM05D000072 ORTHO05D000026 5.0e-09 64.3 81 40.7
Nitab4.5_0003652g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 6.5e-09 63.9 76 50.0
Dinv34807 Davidia involucrata HOM05D000072 ORTHO05D000026 8.4e-09 63.5 78 42.3
Duzib138G1150 Durio zibethinus HOM05D000072 ORTHO05D000026 8.4e-09 63.5 69 39.1
MD09G1255100 Malus domestica HOM05D000260 ORTHO05D000318 8.4e-09 63.5 53 49.1
Psat3g097480 Pisum sativum HOM05D000072 ORTHO05D000026 8.4e-09 63.5 55 47.3
QL12p016308 Quercus lobata HOM05D000072 ORTHO05D000026 8.4e-09 63.5 62 40.3
vmacro05530 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 8.4e-09 63.5 53 49.1
CiPaw.03G063700 Carya illinoinensis HOM05D000260 ORTHO05D000318 1.1e-08 63.2 56 48.2
Cc07_g08660 Coffea canephora HOM05D000072 ORTHO05D000026 1.1e-08 63.2 81 42.0
RcHm_v2.0_Chr6g0273031 Rosa chinensis HOM05D000260 ORTHO05D000318 1.1e-08 63.2 54 48.1
Sc06g0006900 Simmondsia chinensis HOM05D000260 ORTHO05D000318 1.1e-08 63.2 56 46.4
EL10Ac2g04539 Beta vulgaris HOM05D000072 ORTHO05D000026 1.4e-08 62.8 56 48.2
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.4e-08 62.8 62 45.2
Gorai.008G056600 Gossypium raimondii HOM05D000260 ORTHO05D000318 1.4e-08 62.8 70 37.1
Potri.017G117340 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.4e-08 62.8 63 41.3
vmacro09588 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.4e-08 62.8 44 59.1
EL10Ac2g04545 Beta vulgaris HOM05D000260 ORTHO05D000318 1.9e-08 62.4 58 46.6
Potri.017G116900 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.9e-08 62.4 53 49.1
TPR.G36593 Trifolium pratense HOM05D000260 ORTHO05D000318 1.9e-08 62.4 57 42.1
CAN.G625.37 Capsicum annuum HOM05D000072 ORTHO05D000026 2.5e-08 62.0 54 53.7
Gohir.D01G041600 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.5e-08 62.0 74 41.9
HanXRQChr11g0325031 Helianthus annuus HOM05D000072 ORTHO05D000318 2.5e-08 62.0 79 39.2
HanXRQChr11g0325421 Helianthus annuus HOM05D000072 ORTHO05D000026 2.5e-08 62.0 79 39.2
Prupe.3G145800 Prunus persica HOM05D000072 ORTHO05D000026 2.5e-08 62.0 53 45.3
Prupe.3G146100 Prunus persica HOM05D000072 ORTHO05D000026 2.5e-08 62.0 70 37.1
Sopen02g030960 Solanum pennellii HOM05D000260 ORTHO05D000318 2.5e-08 62.0 51 52.9
COL.COLO4_09361 Corchorus olitorius HOM05D000260 ORTHO05D000318 3.2e-08 61.6 54 46.3
HanXRQChr11g0325081 Helianthus annuus HOM05D000260 ORTHO05D000318 3.2e-08 61.6 77 41.6
QL02p050590 Quercus lobata HOM05D000260 ORTHO05D000318 3.2e-08 61.6 80 36.2
CiPaw.04G042600 Carya illinoinensis HOM05D000072 ORTHO05D000026 4.2e-08 61.2 66 40.9
DCAR_025904 Daucus carota HOM05D002670 ORTHO05D003079 4.2e-08 61.2 46 52.2
SGA_v2.0_scaffold202G41465 Striga asiatica HOM05D000260 ORTHO05D000318 4.2e-08 61.2 64 42.2
Ciclev10013644m.g Citrus clementina HOM05D000072 ORTHO05D000026 5.5e-08 60.8 73 35.6
Haze_14164 Corylus avellana HOM05D000260 ORTHO05D000318 5.5e-08 60.8 53 45.3
Gorai.002G052200 Gossypium raimondii HOM05D000072 ORTHO05D000026 5.5e-08 60.8 74 41.9
Prupe.3G146600 Prunus persica HOM05D000260 ORTHO05D000318 5.5e-08 60.8 53 43.4
VMungo1383G2565 Vigna mungo HOM05D000260 ORTHO05D013008 5.5e-08 60.8 59 42.4
Ciclev10011179m.g Citrus clementina HOM05D000260 ORTHO05D000318 7.1e-08 60.5 72 40.3
Actinidia17644 Actinidia chinensis HOM05D000260 ORTHO05D000318 9.3e-08 60.1 52 50.0
AUR62023281 Chenopodium quinoa HOM05D000260 ORTHO05D000318 9.3e-08 60.1 56 46.4
Lsat_1_v5_gn_4_155900 Lactuca sativa HOM05D000260 ORTHO05D000318 9.3e-08 60.1 64 46.9
Actinidia36338 Actinidia chinensis HOM05D000260 ORTHO05D000318 1.2e-07 59.7 80 38.8
EL10Ac2g04544 Beta vulgaris HOM05D000260 ORTHO05D000318 1.2e-07 59.7 53 45.3
CAN.G625.38 Capsicum annuum HOM05D000072 ORTHO05D000026 1.2e-07 59.7 76 42.1
Duzib138G0784 Durio zibethinus HOM05D000072 ORTHO05D000026 1.2e-07 59.7 56 42.9
Duzib213G0625 Durio zibethinus HOM05D000072 ORTHO05D000026 1.2e-07 59.7 71 36.6
Gohir.D01G041700 Gossypium hirsutum HOM05D000072 ORTHO05D000026 1.2e-07 59.7 74 40.5
Gorai.002G052300 Gossypium raimondii HOM05D000072 ORTHO05D000026 1.2e-07 59.7 74 40.5
Sabra17G0097500 Salix brachista HOM05D000260 ORTHO05D000318 1.2e-07 59.7 75 40.0
Hund16172 Selenicereus undatus HOM05D000260 ORTHO05D000318 1.2e-07 59.7 58 41.4
Thecc.04G130400 Theobroma cacao HOM05D000072 ORTHO05D000026 1.2e-07 59.7 74 39.2
Gohir.A01G052200 Gossypium hirsutum HOM05D000072 ORTHO05D000026 1.6e-07 59.3 74 40.5
ECA232G1450 Erigeron canadensis HOM05D002670 ORTHO05D000318 2.1e-07 58.9 67 41.8
Gohir.A01G052300 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.1e-07 58.9 74 40.5
CiPaw.04G043900 Carya illinoinensis HOM05D000260 ORTHO05D000318 2.7e-07 58.5 51 47.1
Migut.H00231 Erythranthe guttata HOM05D000072 ORTHO05D000026 2.7e-07 58.5 59 42.4
Gohir.A12G054600 Gossypium hirsutum HOM05D000260 ORTHO05D000318 3.5e-07 58.2 70 35.7
PGSC0003DMG400026388 Solanum tuberosum HOM05D000072 ORTHO05D000026 3.5e-07 58.2 60 43.3
TWI74G0852 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 3.5e-07 58.2 68 36.8
Actinidia17645 Actinidia chinensis HOM05D000260 ORTHO05D000318 4.6e-07 57.8 52 48.1
RcHm_v2.0_Chr6g0264401 Rosa chinensis HOM05D000260 ORTHO05D000318 4.6e-07 57.8 59 39.0
Sabra17G0096800 Salix brachista HOM05D000464 ORTHO05D000408 4.6e-07 57.8 52 44.2
Sopen02g030890 Solanum pennellii HOM05D000072 ORTHO05D000026 4.6e-07 57.8 70 41.4
Haze_14182 Corylus avellana HOM05D000260 ORTHO05D000318 6.1e-07 57.4 53 43.4
Gohir.D11G171500 Gossypium hirsutum HOM05D000260 ORTHO05D000318 6.1e-07 57.4 72 38.9
GSVIVG01030995001 Vitis vinifera HOM05D000072 ORTHO05D000026 6.1e-07 57.4 55 45.5
Ciclev10011232m.g Citrus clementina HOM05D000072 ORTHO05D000026 7.9e-07 57.0 54 44.4
QL10p047659 Quercus lobata HOM05D000260 ORTHO05D000318 7.9e-07 57.0 53 41.5
Rhsim10G0069600 Rhododendron simsii HOM05D000260 ORTHO05D000318 7.9e-07 57.0 78 38.5
CiPaw.03G064200 Carya illinoinensis HOM05D000072 ORTHO05D000026 1.0e-06 56.6 53 45.3
Peaxi162Scf00394g00824 Petunia axillaris HOM05D000072 ORTHO05D000026 1.0e-06 56.6 55 50.9
Peaxi162Scf00394g00915 Petunia axillaris HOM05D000260 ORTHO05D000318 1.0e-06 56.6 55 50.9
Solyc02g086210.4 Solanum lycopersicum HOM05D000072 ORTHO05D000318 1.0e-06 56.6 60 41.7
arahy.Tifrunner.gnm1.ann1.JH9VB6 Arachis hypogaea HOM05D000260 ORTHO05D000318 1.3e-06 56.2 41 61.0
arahy.Tifrunner.gnm1.ann1.MQ5PPI Arachis hypogaea HOM05D000260 ORTHO05D000318 1.3e-06 56.2 41 61.0
arahy.Tifrunner.gnm1.ann1.Y6H081 Arachis hypogaea HOM05D000260 ORTHO05D000318 1.3e-06 56.2 41 61.0
AUR62009021 Chenopodium quinoa HOM05D000260 ORTHO05D000318 1.3e-06 56.2 56 42.9
Hund10291 Selenicereus undatus HOM05D000260 ORTHO05D000318 1.3e-06 56.2 79 36.7
AUR62023280 Chenopodium quinoa HOM05D000260 ORTHO05D000318 1.8e-06 55.8 54 42.6
Oeu010771.2 Olea europaea HOM05D000260 ORTHO05D000318 1.8e-06 55.8 50 48.0
Hund13704 Selenicereus undatus HOM05D000260 ORTHO05D000318 1.8e-06 55.8 52 42.3
CAN.G625.46 Capsicum annuum HOM05D000260 ORTHO05D000318 2.3e-06 55.5 46 56.5
Manes.01G112301 Manihot esculenta HOM05D000260 ORTHO05D000318 2.3e-06 55.5 51 45.1
Rhsim08G0091700 Rhododendron simsii HOM05D000072 ORTHO05D000026 2.3e-06 55.5 48 52.1
AUR62009029 Chenopodium quinoa HOM05D000072 ORTHO05D000026 3.9e-06 54.7 52 42.3
Eucgr.F02516 Eucalyptus grandis HOM05D000072 ORTHO05D000026 3.9e-06 54.7 55 41.8
Gohir.A09G001300 Gossypium hirsutum HOM05D000260 ORTHO05D000318 3.9e-06 54.7 71 43.7
QL02p049624 Quercus lobata HOM05D000260 ORTHO05D000318 3.9e-06 54.7 55 41.8
Medtr7g082460 Medicago truncatula HOM05D000072 ORTHO05D000026 5.1e-06 54.3 55 43.6
Sopen02g030970 Solanum pennellii HOM05D000260 ORTHO05D000318 5.1e-06 54.3 46 47.8
COL.COLO4_09357 Corchorus olitorius HOM05D000464 ORTHO05D000408 6.7e-06 53.9 57 40.4
Duzib084G1009 Durio zibethinus HOM05D000260 ORTHO05D000318 6.7e-06 53.9 70 40.0
Sp1g16340 Schrenkiella parvula HOM05D000260 ORTHO05D000318 6.7e-06 53.9 70 40.0
Cfa023329 Carpinus fangiana HOM05D000260 ORTHO05D000318 8.7e-06 53.5 45 44.4
CiPaw.03G062400 Carya illinoinensis HOM05D000260 ORTHO05D000318 8.7e-06 53.5 43 48.8
Eucgr.B00749 Eucalyptus grandis HOM05D000260 ORTHO05D000318 8.7e-06 53.5 48 45.8
Eucgr.B00761 Eucalyptus grandis HOM05D000260 ORTHO05D000318 8.7e-06 53.5 48 45.8
Eucgr.B00770 Eucalyptus grandis HOM05D000260 ORTHO05D000318 8.7e-06 53.5 48 45.8


User provided reference genes

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