Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 2155.2 1112 100.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1503.4 1149 68.6
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1347.8 1147 61.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1322.0 1204 59.6
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1305.8 1150 59.7
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1270.4 1149 59.4
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1255.4 1154 58.1
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1248.4 1224 55.5
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1236.9 1150 57.9
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1235.7 1148 57.6
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1229.5 1150 56.8
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1227.2 1155 55.4
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1225.7 1136 57.4
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1218.8 1136 56.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1218.4 1148 56.4
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1209.9 1152 56.5
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1209.5 1151 56.6
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1204.5 1152 56.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1198.0 1160 56.0
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1194.9 1167 56.2
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1186.8 1151 55.8
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1185.2 1153 55.9
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1181.0 1144 56.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1180.6 1133 55.2
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1176.8 1134 55.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1167.5 1146 55.4
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 0.0e+00 1153.7 1016 59.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1152.1 1150 54.2
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1149.8 1149 54.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 0.0e+00 1147.9 1107 55.8
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1144.8 1144 53.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1142.1 1149 54.0
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1119 54.2
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1130.9 1148 54.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1128.6 1155 53.2
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1126.3 1152 53.7
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1122.5 1138 53.2
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 0.0e+00 1122.5 1119 54.7
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1117.8 1152 52.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1115.9 1141 53.8
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1108.2 1142 52.0
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1106.3 1152 51.9
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1102.8 1147 52.0
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1102.0 1150 52.8
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1101.3 1140 52.6
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1099.7 1133 52.4
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1098.2 1152 53.0
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1096.6 1120 53.7
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1091.6 1141 50.7
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1088.2 1137 51.5
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1081.6 1112 52.8
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 2.3e-311 1072.4 1142 51.0
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 7.5e-310 1067.4 1223 49.2
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 9.8e-310 1067.0 1134 51.8
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.9e-308 1062.8 1095 53.2
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 1.3e-306 1056.6 1139 50.5
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.3e-306 1055.8 1023 55.0
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 5.0e-306 1054.7 1150 51.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.3e-305 1052.0 1122 52.1
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.2e-299 1033.5 1100 50.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 2.7e-299 1032.3 1133 49.6
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 2.3e-298 1029.2 1131 49.9
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 7.3e-297 1024.2 1147 49.3
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 8.1e-296 1020.8 1072 53.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 2.3e-295 1019.2 1143 49.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.6e-291 1006.5 1134 49.3
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.3e-290 1003.4 1067 51.9
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 2.5e-289 999.2 1134 50.5
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 5.2e-287 991.5 1134 47.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 5.2e-287 991.5 1145 48.7
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.1e-283 979.5 1145 46.6
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.1e-281 973.8 1145 46.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.9e-281 973.0 1163 46.8
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.9e-281 973.0 1122 50.0
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 4.3e-281 971.8 1147 46.3
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.1e-280 969.5 1145 46.2
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 2.8e-280 969.1 1146 46.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 1.4e-279 966.8 1139 46.4
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 4.0e-279 965.3 1145 45.8
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 5.3e-279 964.9 1146 46.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.9e-277 958.4 1146 45.9
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 3.5e-275 952.2 1146 45.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 3.9e-274 948.7 1073 49.1
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 2.8e-272 942.6 1097 49.0
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.7e-269 933.3 1139 46.0
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.3e-264 917.1 1138 46.3
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 6.9e-263 911.4 1145 44.9
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.1e-260 904.0 1060 49.1
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.7e-259 899.4 1054 49.5
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.1e-256 889.8 1159 43.4
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 5.8e-254 881.7 898 52.3
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 7.2e-244 848.2 959 49.1
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 6.7e-242 841.6 1143 42.6
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.4e-231 806.6 938 48.8
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.4e-175 621.3 1038 38.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 7.4e-148 529.3 1169 31.9
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.0e-144 518.8 695 44.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 6.9e-138 496.1 652 44.3
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 5.1e-133 479.9 1176 29.5
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.7e-132 476.5 439 59.5
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-124 452.2 336 69.3
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.2e-119 434.1 431 52.2
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.2e-115 421.4 523 43.0
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.4e-114 417.9 1106 30.3
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 5.0e-96 357.1 504 40.1
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.2e-94 352.4 430 47.2
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.7e-94 351.3 451 45.9
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 7.3e-87 326.6 236 70.3
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 8.3e-75 286.6 1280 25.5
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.1e-70 271.9 232 59.5
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.2e-66 258.1 206 66.0
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 6.0e-65 253.8 309 50.2
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 1.1e-61 243.0 155 70.3
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.1e-55 223.0 258 49.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 8.9e-53 213.4 180 58.3
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.9e-51 207.6 324 41.0
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.4e-50 204.1 251 44.6
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 4.0e-45 188.0 184 54.9
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.7e-41 175.3 159 54.7
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-35 156.0 118 68.6
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 5.1e-32 144.4 1252 21.8
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.9e-31 142.5 177 47.5
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.9e-31 142.5 133 54.9
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 2.8e-30 138.7 171 43.9
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.6e-28 132.1 96 76.0
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.6e-28 132.1 96 76.0
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.4e-28 131.7 122 59.0
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 4.9e-27 127.9 198 40.9
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 4.9e-27 127.9 198 40.9
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.5e-26 124.4 102 66.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.2e-25 123.2 164 40.9
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 7.9e-25 120.6 123 50.4
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.3e-24 119.8 117 50.4
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.0e-24 118.6 121 49.6
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 4.3e-23 114.8 276 32.2
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 8.2e-22 110.5 93 62.4
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 2.6e-20 105.5 63 66.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 4.5e-20 104.8 127 43.3
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.7e-17 95.5 75 61.3
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 4.6e-17 94.7 143 36.4
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.8e-16 92.8 55 81.8
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.0e-16 92.0 90 50.0
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.3e-14 86.7 77 62.3
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.4e-13 83.2 57 73.7
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.8e-13 82.8 63 63.5
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 4.1e-13 81.6 92 46.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.3e-13 81.3 61 68.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 5.3e-13 81.3 73 54.8
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 2.9e-11 75.5 88 51.1
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.1e-07 63.5 48 54.2
Zm00001eb105150 Zea mays HOM05D002451 ORTHO05D005601 3.7e-06 58.5 46 56.5


User provided reference genes

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