Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 0.0e+00 1305.8 656 100.0
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.5e-188 663.7 657 57.5
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 5.4e-175 618.6 658 54.7
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 8.4e-168 594.7 653 51.6
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 6.7e-165 585.1 656 48.9
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.9e-164 583.6 655 51.5
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 1.1e-162 577.8 657 49.0
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 4.0e-162 575.9 648 50.6
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 9.0e-162 574.7 659 50.2
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.1e-159 567.8 654 49.8
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 1.2e-158 564.3 684 49.1
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 4.6e-158 562.4 649 49.8
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.8e-157 560.5 657 49.2
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 3.7e-155 552.7 658 49.5
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 9.0e-154 548.1 680 47.2
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.5e-153 547.4 652 48.9
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 4.5e-153 545.8 696 46.6
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.9e-151 540.4 646 48.0
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 4.6e-150 535.8 664 48.3
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.1e-148 531.2 663 49.9
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 4.3e-148 529.3 640 47.8
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 7.4e-148 528.5 658 47.6
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.3e-147 527.7 656 47.3
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.2e-147 526.9 646 47.5
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 6.3e-147 525.4 658 47.4
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 3.1e-146 523.1 654 47.2
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 2.2e-144 516.9 656 47.7
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 9.4e-143 511.5 665 47.5
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 3.0e-141 506.5 706 44.9
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 4.8e-139 499.2 648 47.7
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 7.2e-135 485.3 657 44.6
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 1.6e-134 484.2 648 45.4
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 3.6e-134 483.0 657 45.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 6.1e-134 482.3 655 44.3
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 6.1e-134 482.3 686 44.3
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 8.0e-134 481.9 652 45.2
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.0e-133 481.5 659 43.9
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 3.0e-133 479.9 438 58.0
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 8.8e-133 478.4 655 45.0
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.1e-132 478.0 648 45.5
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 3.3e-132 476.5 659 44.0
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 4.4e-132 476.1 671 43.7
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 4.4e-132 476.1 666 43.7
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 2.2e-131 473.8 667 43.8
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 2.8e-131 473.4 670 43.4
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 4.8e-131 472.6 659 43.9
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 8.2e-131 471.9 666 43.4
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 9.1e-130 468.4 659 43.9
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 2.6e-129 466.8 828 38.6
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 5.9e-129 465.7 698 43.3
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 5.0e-128 462.6 654 44.2
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 3.2e-127 459.9 666 42.6
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 5.5e-127 459.1 657 43.5
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.1e-126 457.2 631 43.4
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 2.1e-126 457.2 727 42.0
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 3.6e-126 456.4 658 43.6
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.0e-125 454.9 635 43.8
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.2e-124 451.4 656 43.0
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 2.6e-124 450.3 654 42.7
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 4.4e-124 449.5 451 52.1
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.4e-122 444.5 668 42.2
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 7.0e-122 442.2 632 44.0
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 2.7e-121 440.3 666 42.5
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 3.8e-120 436.4 661 43.1
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.2e-118 431.4 589 45.5
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 4.7e-118 429.5 407 57.0
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.0e-112 411.8 627 42.3
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 5.0e-112 409.5 432 50.9
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.2e-110 404.8 663 40.4
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.2e-108 398.3 661 39.5
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 3.7e-107 393.3 660 40.3
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 7.8e-105 385.6 716 38.1
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 7.8e-105 385.6 657 40.5
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.9e-104 383.6 627 39.9
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 6.1e-102 375.9 402 52.5
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 8.0e-102 375.6 662 39.6
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.2e-97 361.7 702 38.3
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 2.7e-97 360.5 652 37.1
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 4.6e-97 359.8 361 54.0
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 1.1e-93 348.6 634 37.4
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 1.7e-88 331.3 427 45.9
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.4e-85 321.6 666 36.3
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 4.0e-85 320.1 434 43.3
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 8.9e-85 318.9 654 36.4
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 2.4e-77 294.3 450 38.9
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 6.8e-77 292.7 589 38.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.2e-76 292.0 589 38.2
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 1.9e-74 284.6 509 39.9
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.8e-73 279.3 656 33.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.8e-69 268.1 785 30.6
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.4e-61 241.9 709 31.3
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.5e-60 238.4 624 32.5
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 6.2e-54 216.5 437 33.4
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.5e-52 211.8 202 56.9
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 5.0e-43 180.3 436 34.6
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.1e-39 169.1 200 48.0
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.4e-37 162.2 199 47.2
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 8.5e-35 152.9 258 34.9
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 2.1e-33 148.3 196 44.4
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 1.4e-32 145.6 352 34.1
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 4.8e-30 137.1 358 33.2
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 1.7e-27 128.6 255 38.4
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 1.6e-25 122.1 124 56.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.2e-20 105.9 165 37.6
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-18 99.4 168 41.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.3e-16 91.7 162 36.4
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 6.3e-14 83.6 156 37.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 7.0e-13 80.1 108 44.4
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 9.1e-13 79.7 126 41.3
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.5e-12 77.8 436 24.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.2e-07 62.8 58 58.6
SEGI_40191 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 7.5e-07 60.1 57 54.4
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 9.8e-07 59.7 86 43.0


User provided reference genes

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