Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.3e-159 566.2 265 100.0
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 3.1e-137 491.9 264 86.0
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.2e-136 490.0 260 84.2
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.9e-136 487.6 260 85.4
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 5.9e-136 487.6 257 86.8
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.7e-136 487.3 260 85.0
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 7.2e-134 480.7 260 85.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.7e-133 478.8 266 82.3
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.1e-131 473.4 263 81.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.5e-131 473.0 263 82.1
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.5e-131 473.0 259 82.6
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.3e-130 469.9 260 83.5
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.3e-130 469.9 261 82.4
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.7e-130 469.5 269 81.8
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.7e-130 469.5 266 81.2
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.7e-130 469.5 265 82.6
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 3.7e-130 468.4 260 82.3
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 6.3e-130 467.6 263 80.6
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 6.3e-130 467.6 266 80.1
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 8.2e-130 467.2 264 81.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.8e-129 466.1 260 81.9
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 3.1e-129 465.3 260 82.3
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.1e-129 464.9 261 82.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 5.3e-129 464.5 263 80.6
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 9.1e-129 463.8 260 81.9
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 9.1e-129 463.8 258 81.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.5e-128 463.0 261 82.0
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 3.4e-128 461.8 266 79.7
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 3.4e-128 461.8 260 81.2
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 3.4e-128 461.8 264 82.2
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 4.5e-128 461.5 261 80.8
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.9e-128 461.1 260 81.2
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 7.7e-128 460.7 266 79.3
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.7e-128 460.7 266 80.8
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 7.7e-128 460.7 264 79.9
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.0e-127 460.3 258 79.5
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.3e-127 459.9 259 80.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.3e-127 459.9 264 79.9
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.7e-127 459.5 259 80.7
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.7e-127 459.5 266 79.3
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.7e-127 459.5 259 81.9
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.9e-127 458.8 260 81.9
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.9e-127 458.8 259 80.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.0e-127 458.0 257 80.9
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.0e-127 458.0 261 81.6
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-126 456.8 261 80.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.1e-126 456.8 255 80.8
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.9e-126 456.1 261 80.5
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.2e-126 455.3 251 81.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.2e-125 453.4 260 78.5
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.6e-125 453.0 261 78.5
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.6e-125 453.0 261 78.5
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 2.7e-125 452.2 264 78.4
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.6e-125 451.8 256 80.9
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.6e-125 451.8 256 80.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 6.1e-125 451.1 266 80.8
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-124 449.9 261 77.8
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.4e-124 449.9 262 78.2
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.8e-124 449.5 265 78.9
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.3e-124 449.1 261 77.8
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.0e-124 448.7 259 81.1
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-124 448.4 260 77.3
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 3.9e-124 448.4 261 77.4
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.9e-124 448.4 255 80.0
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.9e-124 448.4 266 78.2
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.8e-124 447.2 258 81.0
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.1e-123 446.8 261 77.4
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.1e-123 446.8 258 81.0
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-123 446.0 259 80.3
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-123 446.0 259 80.3
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.7e-123 444.5 258 80.6
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 7.4e-123 444.1 261 77.0
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.4e-121 439.9 259 76.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 5.3e-121 438.0 259 76.4
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 3.5e-120 435.3 248 79.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 3.5e-120 435.3 263 74.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 7.7e-120 434.1 261 77.8
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.7e-119 433.0 267 74.5
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.7e-119 433.0 267 75.7
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 5.0e-119 431.4 261 77.4
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 5.0e-119 431.4 262 76.7
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 5.0e-119 431.4 257 76.7
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.4e-118 429.9 261 77.0
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.9e-118 429.5 288 70.1
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.9e-118 429.5 251 77.3
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.2e-118 428.7 263 76.0
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 4.2e-118 428.3 257 74.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 5.5e-118 427.9 261 75.9
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 7.2e-118 427.6 272 73.9
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.6e-117 426.4 263 75.3
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.6e-117 426.4 261 75.1
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.7e-117 425.6 261 76.6
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.0e-116 423.7 261 77.0
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.4e-116 423.3 262 73.7
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 5.2e-116 421.4 271 73.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.2e-116 421.4 230 83.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.5e-115 419.9 281 70.1
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.3e-115 418.7 273 71.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.4e-115 417.5 279 70.6
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.8e-113 412.9 261 75.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.4e-113 412.5 296 68.6
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.1e-113 412.1 253 73.5
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 4.1e-113 411.8 211 87.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.0e-113 411.0 229 81.2
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.9e-111 405.6 296 66.9
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 5.0e-111 404.8 212 84.4
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.5e-110 402.5 257 71.6
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.7e-109 399.1 229 76.0
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.2e-107 393.7 233 73.4
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 2.0e-107 392.9 275 70.2
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 6.3e-106 387.9 233 73.0
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 6.5e-103 377.9 212 77.8
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.2e-101 373.6 236 68.6
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.1e-101 371.3 222 76.1
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 8.0e-101 370.9 227 68.7
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.2e-99 367.1 223 70.0
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.1e-97 360.5 218 70.6
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.4e-97 358.2 223 74.0
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.2e-96 357.1 227 65.6
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 7.2e-94 347.8 266 64.3
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.1e-93 346.3 282 60.6
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 2.8e-93 345.9 194 79.9
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.9e-88 328.2 328 52.4
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 5.9e-88 328.2 233 66.5
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.0e-87 325.1 164 85.4
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.9e-86 323.2 289 57.4
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.2e-85 320.5 169 84.6
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 4.7e-85 318.5 215 61.9
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.5e-78 296.2 172 70.9
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 5.8e-75 285.0 164 79.3
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.6e-71 271.6 163 78.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.3e-68 263.1 146 80.8
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 9.9e-67 257.7 138 82.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.3e-62 242.3 214 57.5
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.4e-60 236.5 199 58.8
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.4e-49 199.9 115 77.4
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.0e-47 193.0 128 70.3
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 8.1e-37 158.3 106 68.9
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.1e-30 137.9 83 79.5
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 5.0e-26 122.5 80 70.0
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.1e-25 121.3 64 89.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.6e-24 117.5 72 75.0
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.7e-24 116.7 65 69.2
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.3e-22 109.8 65 69.2
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.3e-21 107.8 54 85.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.1e-20 104.8 95 56.8
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.3e-18 97.8 61 77.0
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.5e-14 84.3 90 52.2
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.5e-14 84.3 84 51.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.0e-14 84.0 43 81.4
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 5.7e-14 82.4 47 85.1
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 8.2e-13 78.6 52 71.2
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.1e-12 78.2 50 70.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 3.1e-12 76.6 50 66.0
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.2e-08 64.7 66 50.0
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 2.1e-08 63.9 160 29.4


User provided reference genes

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