Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 1.7e-60 235.7 115 100.0
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 1.5e-48 196.1 103 90.3
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 3.4e-48 194.9 113 84.1
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 2.5e-22 109.0 107 57.0
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 7.2e-22 107.5 107 56.1
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.0e-20 103.6 93 58.1
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.0e-20 102.1 92 57.6
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.9e-20 101.7 93 55.9
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 5.1e-20 101.3 62 74.2
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 8.7e-20 100.5 108 50.9
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 8.7e-20 100.5 108 51.9
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 8.7e-20 100.5 113 48.7
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 1.1e-19 100.1 58 77.6
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.5e-19 99.0 107 45.8
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.5e-19 99.0 107 45.8
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 4.3e-19 98.2 97 52.6
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 5.7e-19 97.8 58 77.6
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 5.7e-19 97.8 55 78.2
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 7.4e-19 97.4 120 45.8
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 7.4e-19 97.4 120 45.8
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 7.4e-19 97.4 57 73.7
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 9.7e-19 97.1 55 78.2
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.8e-18 95.5 76 61.8
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 3.7e-18 95.1 62 69.4
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 6.3e-18 94.4 55 78.2
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 6.3e-18 94.4 55 76.4
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 8.2e-18 94.0 98 52.0
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 8.2e-18 94.0 55 78.2
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 8.2e-18 94.0 98 52.0
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.1e-17 93.6 55 74.5
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.1e-17 93.6 115 47.0
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.4e-17 93.2 55 76.4
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.8e-17 92.8 56 73.2
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.8e-17 92.8 54 75.9
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.8e-17 92.8 58 70.7
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 2.4e-17 92.4 121 47.9
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 3.1e-17 92.0 121 49.6
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.1e-17 92.0 55 72.7
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 4.1e-17 91.7 64 67.2
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 9.0e-17 90.5 55 74.5
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 9.0e-17 90.5 55 72.7
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 9.0e-17 90.5 75 58.7
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 9.0e-17 90.5 55 72.7
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 9.0e-17 90.5 99 49.5
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 9.0e-17 90.5 99 49.5
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 9.0e-17 90.5 114 43.9
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.2e-16 90.1 72 62.5
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 1.5e-16 89.7 108 44.4
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.5e-16 89.7 87 50.6
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 1.5e-16 89.7 107 46.7
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.5e-16 89.7 55 72.7
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.5e-16 89.7 55 72.7
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 2.0e-16 89.4 119 47.1
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 2.0e-16 89.4 100 47.0
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.0e-16 89.4 55 69.1
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 2.0e-16 89.4 76 60.5
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 2.6e-16 89.0 53 73.6
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.6e-16 89.0 99 47.5
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.5e-16 88.2 71 62.0
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.5e-16 88.2 55 70.9
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.5e-16 88.2 65 64.6
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 5.9e-16 87.8 71 57.7
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.0e-15 87.0 55 67.3
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 1.3e-15 86.7 55 67.3
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.3e-15 86.7 55 67.3
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.3e-15 86.7 96 49.0
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 1.3e-15 86.7 115 41.7
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.7e-15 86.3 98 48.0
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.7e-15 86.3 115 40.9
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 2.2e-15 85.9 58 69.0
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 5.0e-15 84.7 118 39.8
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 5.0e-15 84.7 100 47.0
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 6.5e-15 84.3 121 43.0
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 8.5e-15 84.0 121 43.8
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 8.5e-15 84.0 63 57.1
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 1.1e-14 83.6 100 45.0
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 1.4e-14 83.2 56 67.9
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 1.9e-14 82.8 98 45.9
Lj9A35G21 Lonicera japonica HOM05D003561 ORTHO05D234523 1.9e-14 82.8 48 83.3
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.5e-14 82.4 52 73.1
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 3.2e-14 82.0 63 57.1
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.2e-14 82.0 63 57.1
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.2e-14 82.0 71 56.3
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.2e-14 82.0 63 57.1
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.2e-14 81.6 97 47.4
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.2e-14 81.6 97 47.4
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 4.2e-14 81.6 64 62.5
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 5.5e-14 81.3 52 73.1
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 5.5e-14 81.3 55 65.5
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 5.5e-14 81.3 55 65.5
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 7.2e-14 80.9 52 71.2
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 7.2e-14 80.9 101 42.6
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 9.4e-14 80.5 52 71.2
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 9.4e-14 80.5 64 62.5
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 1.2e-13 80.1 97 46.4
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.2e-13 80.1 97 49.5
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.2e-13 80.1 97 49.5
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 1.2e-13 80.1 58 65.5
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.6e-13 79.7 63 55.6
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 2.1e-13 79.3 69 55.1
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 2.1e-13 79.3 52 71.2
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 2.7e-13 79.0 54 74.1
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 2.7e-13 79.0 65 60.0
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 4.6e-13 78.2 52 71.2
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 4.6e-13 78.2 81 48.1
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 4.6e-13 78.2 50 72.0
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 4.6e-13 78.2 53 66.0
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 6.1e-13 77.8 53 62.3
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 6.1e-13 77.8 52 69.2
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 7.9e-13 77.4 52 69.2
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 1.0e-12 77.0 50 70.0
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.0e-12 77.0 128 39.1
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.0e-12 77.0 97 45.4
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.4e-12 76.6 99 48.5
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 2.3e-12 75.9 56 64.3
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 3.0e-12 75.5 80 48.8
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 3.0e-12 75.5 55 58.2
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 3.0e-12 75.5 68 52.9
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.9e-12 75.1 96 46.9
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 6.7e-12 74.3 52 65.4
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 8.8e-12 73.9 56 64.3
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 8.8e-12 73.9 49 73.5
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.5e-11 73.2 50 68.0
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 2.5e-11 72.4 52 63.5
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 2.5e-11 72.4 85 49.4
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 2.5e-11 72.4 108 40.7
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.3e-11 72.0 47 70.2
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.3e-11 72.0 47 70.2
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 3.3e-11 72.0 116 39.7
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 4.3e-11 71.6 72 51.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 4.3e-11 71.6 72 51.4
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 1.3e-10 70.1 78 43.6
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.3e-10 70.1 55 60.0
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 1.7e-10 69.7 52 65.4
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 2.2e-10 69.3 79 44.3
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 2.2e-10 69.3 88 45.5
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.8e-10 68.9 53 67.9
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.8e-10 68.9 53 67.9
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 8.2e-10 67.4 87 42.5
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.4e-09 66.6 55 58.2
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 5.3e-09 64.7 75 44.0
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 5.3e-09 64.7 52 59.6
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 6.9e-09 64.3 102 43.1
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 5.9e-08 61.2 50 58.0
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 1.3e-07 60.1 51 58.8
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 6.5e-07 57.8 42 61.9
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 4.2e-06 55.1 47 55.3


User provided reference genes

Program Settings