Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 2036.5 1040 100.0
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1402.5 1012 72.0
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1365.9 1040 69.2
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1357.8 1043 66.5
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1342.0 1072 65.2
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1301.2 1038 65.2
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1295.0 1028 64.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1290.4 1042 64.9
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1285.8 1028 64.9
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1283.5 1035 64.2
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1281.9 1045 64.8
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1277.3 1043 64.1
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1275.4 1092 62.5
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1272.3 1040 62.6
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1265.4 1040 62.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1259.6 1039 63.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1258.4 1028 63.4
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1255.7 1039 62.9
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1250.3 1030 63.3
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1242.3 1039 62.6
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1234.2 1018 63.0
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1230.7 1034 61.5
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1225.3 1024 62.0
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1225.3 1041 62.4
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1224.9 1039 61.8
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1221.8 1033 62.3
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1218.4 1040 61.3
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1216.8 1033 62.1
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1215.7 1043 62.1
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1214.9 1046 60.9
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1213.0 1031 62.1
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1212.2 1041 61.0
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1208.0 1037 61.2
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1205.7 1042 60.5
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1205.3 1026 61.1
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1204.5 1036 61.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1204.1 1041 60.3
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1203.0 1037 59.7
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1196.4 1036 59.3
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1194.5 1038 60.6
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1193.7 1033 60.2
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1193.3 1040 59.9
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1189.1 1038 60.0
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1186.0 1040 59.5
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1178.7 1038 61.2
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1174.8 1049 58.7
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1174.1 1039 58.4
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1171.8 1039 58.9
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1168.3 1040 58.5
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1168.3 1028 59.7
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1168.3 1074 56.9
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1156.4 1033 58.5
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1151.7 1033 58.1
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1151.0 1027 57.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1147.5 1015 60.4
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1144.8 1033 57.8
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1141.7 1035 57.3
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1140.2 1034 58.0
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1139.8 1032 59.9
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1137.1 1055 58.5
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1125.5 1053 56.4
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1121.3 1037 56.9
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1112.8 1035 56.4
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1112.1 925 63.5
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1108.2 1043 56.4
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1094.7 1041 55.5
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1085.1 1041 55.9
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1077.0 969 58.9
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1075.1 1041 55.1
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 2.8e-311 1072.0 1043 54.7
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1039 54.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 6.2e-306 1054.3 1049 53.8
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.4e-304 1048.5 1038 55.0
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 4.4e-304 1048.1 1039 54.9
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 3.2e-302 1042.0 1043 53.8
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.6e-301 1039.6 1035 54.4
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 3.5e-301 1038.5 1037 55.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 1.7e-300 1036.2 1038 55.4
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.0e-300 1035.4 1035 54.4
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 1.9e-299 1032.7 1041 53.8
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.6e-298 1029.6 1041 53.7
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 4.7e-298 1028.1 1048 53.8
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 8.9e-297 1023.8 1044 51.7
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.2e-294 1015.4 864 62.8
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 3.4e-288 995.3 1050 53.2
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 8.4e-287 990.7 930 55.8
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 7.3e-283 977.6 991 54.3
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 2.4e-278 962.6 1041 51.6
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.4e-272 942.2 1035 49.8
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-264 915.6 1031 48.8
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 9.9e-264 914.1 1046 48.9
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 8.4e-255 884.4 733 61.9
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.1e-254 884.0 774 60.5
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.7e-223 780.4 704 61.2
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 7.2e-206 721.8 615 59.7
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.0e-191 674.9 661 55.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.6e-191 672.2 661 55.4
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.9e-178 630.2 622 55.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 3.6e-173 613.2 549 61.7
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.1e-158 565.1 1074 34.5
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 4.8e-149 533.1 523 56.0
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.3e-146 525.0 1114 33.6
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.9e-137 494.6 347 72.6
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.8e-127 461.5 923 35.1
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 3.7e-117 427.2 414 53.4
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.7e-96 357.8 459 43.6
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.5e-94 352.1 1123 29.1
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 8.3e-93 346.3 328 58.2
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 3.8e-90 337.4 1134 28.5
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 7.8e-75 286.6 389 41.6
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.5e-62 245.7 281 49.5
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.1e-60 239.6 219 56.2
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.1e-52 213.0 575 31.1
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.8e-48 197.6 149 68.5
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 5.4e-44 184.1 147 65.3
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.3e-41 174.9 228 45.2
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.8e-39 169.1 149 54.4
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 4.8e-32 144.4 230 37.4
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 5.1e-26 124.4 152 46.1
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 4.3e-25 121.3 147 42.2
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.7e-25 120.9 90 61.1
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.4e-23 115.5 437 27.5
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.3e-21 109.8 103 56.3
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.1e-20 106.7 212 38.2
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 5.5e-20 104.4 71 67.6
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.5e-20 104.4 72 65.3
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.7e-19 102.1 72 63.9
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.9e-18 98.2 134 42.5
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.0e-14 85.9 50 78.0
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.0e-13 83.6 148 40.5
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.3e-13 83.2 103 44.7
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 5.0e-13 81.3 248 29.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-12 79.7 59 57.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-12 79.7 59 57.6
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 2.1e-11 75.9 65 60.0
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 4.3e-09 68.2 65 56.9
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 2.4e-07 62.4 51 56.9
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.3e-07 61.2 33 81.8
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 2.0e-06 59.3 54 55.6
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-06 58.5 48 56.2


User provided reference genes

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