Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 0.0e+00 1194.5 651 100.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 4.5e-262 907.9 651 77.9
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 4.6e-259 897.9 637 78.3
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 6.9e-255 884.0 634 72.9
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 5.8e-254 880.9 647 71.3
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.0e-253 880.2 656 74.5
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.6e-251 871.3 631 77.2
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 3.0e-250 868.6 657 69.6
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 6.7e-250 867.5 657 69.6
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.9e-249 865.9 646 73.8
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 5.7e-249 864.4 643 71.1
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.1e-247 860.1 657 69.1
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 4.1e-247 858.2 644 73.8
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.6e-246 855.5 640 74.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.9e-245 852.0 533 82.4
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.1e-244 850.1 686 67.2
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 2.5e-244 849.0 645 69.8
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.2e-244 848.6 624 70.7
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.2e-243 846.7 619 71.2
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.6e-243 846.3 565 77.0
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.0e-242 843.6 673 67.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.3e-242 842.4 642 73.4
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.7e-242 840.5 639 73.4
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.8e-240 835.5 543 79.9
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 8.2e-240 833.9 644 68.8
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 9.1e-239 830.5 647 73.0
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.5e-238 829.7 658 72.0
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.0e-238 829.3 658 71.9
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.4e-238 828.6 658 72.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.5e-236 822.4 573 72.3
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.2e-235 820.1 613 69.8
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.6e-235 818.5 613 69.7
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 5.7e-233 811.2 651 69.7
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 2.8e-232 808.9 633 72.8
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 5.3e-231 804.7 570 72.8
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.9e-229 798.9 617 67.6
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.9e-229 798.9 617 67.6
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.9e-229 798.9 634 70.2
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.9e-228 796.2 637 68.4
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.2e-227 793.5 627 66.8
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.2e-227 793.5 650 64.2
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.1e-227 792.7 621 67.3
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 3.6e-227 792.0 615 68.1
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.7e-227 791.6 637 67.5
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.4e-226 790.0 629 67.4
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 6.7e-226 787.7 638 71.0
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 8.8e-226 787.3 548 78.5
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 2.6e-225 785.8 618 69.1
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 3.3e-225 785.4 623 65.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 9.7e-225 783.9 621 71.5
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 2.8e-224 782.3 657 66.7
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 2.8e-224 782.3 641 66.9
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.4e-223 780.0 642 67.0
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.4e-223 779.2 642 67.3
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 5.3e-223 778.1 644 67.4
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.6e-222 775.8 641 64.9
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 3.5e-222 775.4 572 70.6
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 7.7e-222 774.2 599 67.4
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.3e-221 773.5 642 67.9
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.2e-221 772.7 670 64.3
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.6e-219 766.5 611 71.0
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 4.7e-219 765.0 657 62.4
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 6.1e-219 764.6 617 65.5
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.0e-219 764.2 617 66.3
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.0e-218 762.3 615 70.6
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 4.4e-217 758.4 617 65.3
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 2.8e-216 755.7 605 71.6
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.8e-215 753.1 649 64.6
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.4e-215 752.7 566 74.2
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.9e-213 745.7 614 70.4
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.7e-211 738.4 614 69.4
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 3.7e-208 728.8 652 64.1
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 6.3e-208 728.0 620 65.3
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 8.3e-208 727.6 632 67.4
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 2.5e-204 716.1 648 64.5
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 2.1e-203 713.0 649 63.9
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.4e-202 710.3 644 62.7
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.5e-201 706.8 644 62.4
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.5e-201 706.8 519 72.8
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 3.4e-201 705.7 634 64.7
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 7.8e-198 694.5 643 61.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.9e-197 692.6 468 77.4
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 1.1e-196 690.6 643 61.4
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 8.3e-192 674.5 640 57.0
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.0e-190 669.8 666 59.3
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 5.4e-183 645.2 508 71.7
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.5e-177 627.1 619 54.8
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 2.4e-175 619.8 628 53.8
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-170 603.6 536 62.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.0e-170 602.4 468 67.5
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 8.9e-170 601.3 627 56.3
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 2.9e-160 569.7 450 66.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 5.8e-153 545.4 615 53.0
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.1e-150 537.0 637 54.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.5e-148 530.0 606 53.3
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 4.0e-146 522.7 640 47.2
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.1e-143 514.6 390 69.7
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-141 506.9 415 65.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.4e-138 497.7 633 49.0
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-136 490.7 348 71.6
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.9e-136 490.0 365 77.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 4.6e-134 482.6 656 44.1
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.0e-133 481.5 510 59.6
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 7.9e-126 455.3 360 66.1
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 7.4e-124 448.7 317 73.2
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-108 397.9 542 46.3
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 4.1e-90 336.7 314 59.2
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 9.1e-90 335.5 268 66.4
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-85 321.2 217 75.6
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-75 287.7 208 71.6
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-75 287.3 194 73.7
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 2.5e-71 274.2 277 56.7
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-69 267.7 200 69.0
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 9.2e-66 255.8 199 80.4
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.1e-58 232.3 353 40.8
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.3e-56 224.6 184 63.6
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 5.6e-55 219.9 175 82.9
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-54 218.8 175 82.3
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.6e-49 200.3 169 64.5
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.0e-48 199.1 153 69.3
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.2e-46 189.9 123 75.6
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 4.0e-45 187.2 163 73.0
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.6e-38 164.1 243 43.2
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 6.9e-37 159.8 169 57.4
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 7.6e-36 156.4 177 51.4
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.0e-33 146.7 93 78.5
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.7e-32 142.9 105 65.7
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.5e-31 141.4 97 72.2
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-28 131.7 80 82.5
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-25 121.3 78 75.6
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.7e-25 121.3 146 54.8
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 2.3e-24 118.2 311 30.5
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 4.0e-21 107.5 63 79.4
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.0e-19 102.8 110 53.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.2e-19 101.7 71 67.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 8.4e-19 99.8 79 60.8
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 4.1e-13 80.9 89 50.6
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.2e-12 79.3 86 50.0
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 6.5e-11 73.6 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 2.5e-10 71.6 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 2.5e-10 71.6 46 65.2
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 9.7e-07 59.7 38 68.4


User provided reference genes

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