Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 0.0e+00 1323.9 651 100.0
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.3e-282 975.3 653 75.2
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.0e-282 974.9 653 75.3
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 3.5e-267 924.9 652 70.2
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 9.6e-265 916.8 655 70.7
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 3.5e-259 898.3 651 68.8
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 3.5e-259 898.3 654 68.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 4.3e-257 891.3 652 68.3
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.6e-256 889.4 652 68.6
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.8e-256 887.9 652 68.7
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 4.0e-255 884.8 658 68.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.2e-254 883.2 652 68.3
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.6e-254 882.1 681 65.8
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.7e-253 879.4 653 67.1
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.8e-253 878.2 653 67.2
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 4.9e-253 877.9 654 66.7
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.5e-252 875.5 653 67.5
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 3.9e-250 868.2 652 67.5
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 6.7e-250 867.5 653 66.5
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.1e-249 866.7 651 65.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-249 866.3 653 66.6
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.9e-249 865.9 650 66.8
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.3e-249 865.1 616 69.6
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 9.6e-249 863.6 656 66.3
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.8e-247 859.4 650 66.2
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 3.1e-247 858.6 652 66.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 4.1e-247 858.2 650 64.8
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 6.9e-247 857.4 654 65.3
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 9.0e-247 857.1 651 65.3
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.2e-246 856.7 650 65.1
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 2.0e-246 855.9 651 65.9
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 4.5e-246 854.7 656 67.4
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 3.8e-245 851.7 660 65.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 6.5e-245 850.9 650 64.3
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.9e-244 849.4 648 66.0
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 2.5e-244 849.0 651 64.2
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 5.5e-244 847.8 652 64.3
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 7.2e-244 847.4 650 65.1
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 7.2e-244 847.4 650 65.1
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 7.2e-244 847.4 656 64.2
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 9.3e-244 847.0 653 66.0
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.7e-243 845.5 654 66.2
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 6.1e-243 844.3 650 64.0
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 7.9e-243 844.0 659 66.2
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.8e-242 842.8 654 65.4
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 3.9e-242 841.6 655 64.6
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.1e-242 841.3 651 65.7
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.1e-241 840.1 654 63.1
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.9e-241 839.3 650 63.7
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.5e-238 829.7 652 62.9
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.5e-238 829.7 650 63.2
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 5.9e-238 827.8 652 64.9
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.0e-237 827.0 652 63.2
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.0e-237 827.0 650 63.2
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.3e-237 826.6 653 63.6
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.3e-237 826.6 652 64.4
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.7e-237 826.2 652 63.8
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.7e-237 826.2 650 64.0
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 3.8e-237 825.1 653 62.8
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 6.5e-237 824.3 653 62.5
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.9e-236 822.8 651 63.6
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.5e-236 821.2 651 63.0
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 4.6e-235 818.1 650 63.4
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.0e-234 817.0 652 62.6
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 6.7e-234 814.3 664 61.6
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 8.8e-234 813.9 656 62.8
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.5e-233 813.1 651 61.9
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 3.3e-233 812.0 664 61.3
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 3.3e-233 812.0 659 63.0
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 9.7e-233 810.4 652 62.4
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.8e-232 808.9 657 63.8
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.8e-231 806.2 649 63.5
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.2e-230 803.5 651 64.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 4.5e-230 801.6 617 64.5
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.7e-229 799.7 628 64.2
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.5e-228 795.8 628 64.0
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 2.5e-228 795.8 619 65.9
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 4.7e-227 791.6 650 62.3
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.5e-225 786.6 539 71.4
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.3e-216 756.9 652 57.1
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 3.7e-216 755.4 650 56.5
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 7.0e-215 751.1 685 58.0
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 5.2e-210 734.9 651 57.3
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.3e-208 730.3 650 57.4
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 7.2e-204 714.5 573 62.5
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 4.9e-200 701.8 489 73.4
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 3.1e-199 699.1 652 55.1
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.0e-191 671.4 583 62.8
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 6.2e-187 658.3 593 54.6
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.9e-183 646.7 689 50.9
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.0e-183 644.8 622 57.2
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.9e-180 636.7 666 53.2
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.0e-173 614.4 510 61.6
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.8e-171 606.3 595 57.0
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 4.3e-148 529.3 662 44.0
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 2.4e-143 513.5 477 56.8
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 6.7e-141 505.4 553 53.0
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.1e-135 488.0 653 42.3
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.3e-133 480.3 648 41.4
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.7e-128 464.2 253 87.0
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 8.5e-112 408.7 389 50.6
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.7e-110 403.7 423 54.8
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.7e-104 384.4 489 47.2
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 4.1e-98 363.2 362 54.1
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.1e-95 355.1 399 48.1
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.2e-94 351.7 290 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 4.7e-94 349.7 643 37.0
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 2.3e-93 347.4 178 87.6
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-77 295.4 196 71.4
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 4.9e-59 233.4 258 48.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.5e-57 227.3 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.3e-55 220.7 104 94.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.6e-52 211.1 106 85.8
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 3.5e-49 200.7 214 48.1
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 9.9e-36 156.0 499 28.9
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 2.2e-35 154.8 199 42.2
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 7.1e-34 149.8 137 58.4
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.2e-33 149.1 178 45.5
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.7e-30 137.5 205 43.9
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.9e-27 127.9 86 72.1
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.5e-26 124.8 58 86.2
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-24 118.2 83 67.5
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.0e-24 117.9 82 68.3
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.7e-24 116.7 95 56.8
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.4e-18 99.0 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.1e-17 95.1 76 63.2
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.5e-17 94.4 74 64.9
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 4.6e-17 94.0 74 63.5
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.0e-16 92.8 74 63.5
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.3e-16 91.7 74 62.2
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.5e-15 89.0 74 62.2
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 4.2e-10 70.9 93 43.0
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 9.4e-10 69.7 93 41.9
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 5.7e-07 60.5 95 38.9
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.2e-06 58.5 110 38.2
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 4.8e-06 57.4 148 31.1


User provided reference genes

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