Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 6.7e-149 531.9 660 100.0
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 2.1e-57 228.0 169 65.1
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 2.7e-57 227.6 165 66.1
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 3.9e-56 223.8 184 60.9
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 1.1e-53 215.7 201 57.2
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 5.3e-53 213.4 201 56.7
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 1.5e-52 211.8 185 58.4
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 3.8e-51 207.2 157 63.1
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 6.5e-51 206.5 171 59.1
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 1.1e-50 205.7 191 55.0
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 1.9e-50 204.9 183 55.2
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 2.5e-50 204.5 182 57.1
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 9.4e-50 202.6 181 58.6
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 1.6e-49 201.8 162 61.7
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 2.0e-47 194.9 216 50.5
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 4.4e-47 193.7 182 54.4
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 5.7e-47 193.4 176 55.1
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 5.7e-47 193.4 171 55.0
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 1.3e-46 192.2 171 55.0
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 2.8e-46 191.0 192 52.1
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 1.1e-45 189.1 179 59.8
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 3.1e-45 187.6 200 50.0
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 4.1e-45 187.2 167 55.1
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 5.3e-45 186.8 199 49.2
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 1.3e-43 182.2 202 48.0
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 1.1e-42 179.1 176 55.7
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 1.1e-42 179.1 173 48.6
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 1.1e-42 179.1 171 53.2
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 2.5e-42 177.9 176 55.7
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 5.5e-42 176.8 173 49.7
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 9.4e-42 176.0 192 51.0
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 1.2e-41 175.6 176 55.1
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 3.6e-41 174.1 177 50.3
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 6.7e-40 169.9 181 49.7
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 4.4e-39 167.2 170 49.4
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 2.2e-38 164.9 180 46.7
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 2.4e-37 161.4 187 50.8
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 4.1e-37 160.6 158 51.3
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 5.9e-36 156.8 168 46.4
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 5.9e-36 156.8 179 45.8
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 1.0e-35 156.0 168 47.0
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 1.3e-35 155.6 202 45.0
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 6.1e-33 146.7 193 42.0
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.2e-31 142.5 179 42.5
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.6e-31 141.4 173 42.2
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 1.6e-28 132.1 109 56.9
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 2.0e-28 131.7 183 40.4
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 2.7e-28 131.3 203 41.4
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 1.7e-27 128.6 187 41.7
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 6.5e-27 126.7 105 55.2
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 6.5e-27 126.7 173 40.5
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 8.5e-27 126.3 102 57.8
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 1.5e-26 125.6 205 38.5
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 1.9e-26 125.2 197 40.6
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 1.9e-26 125.2 197 40.6
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 2.5e-26 124.8 197 40.6
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 5.5e-26 123.6 177 41.2
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 9.4e-26 122.9 200 38.0
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 1.2e-25 122.5 165 47.3
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 2.7e-25 121.3 170 41.2
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 2.7e-25 121.3 182 42.3
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 6.1e-25 120.2 165 46.1
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 4.0e-24 117.5 105 53.3
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 2.0e-23 115.2 105 52.4
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 6.3e-22 110.2 126 44.4
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 1.0e-19 102.8 127 45.7
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 1.0e-19 102.8 125 43.2
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 1.3e-19 102.4 147 41.5
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 5.0e-19 100.5 147 41.5
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 1.6e-17 95.5 157 35.0
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 1.6e-17 95.5 128 41.4
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 2.3e-16 91.7 105 58.1
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 5.2e-16 90.5 59 62.7
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 2.0e-15 88.6 77 55.8
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 2.6e-15 88.2 106 43.4
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 3.4e-15 87.8 95 45.3
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 5.7e-15 87.0 149 43.0
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 9.8e-15 86.3 127 39.4
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 2.8e-14 84.7 107 43.9
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 3.7e-14 84.3 75 46.7
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 8.3e-14 83.2 78 48.7
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 1.1e-13 82.8 67 56.7
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.8e-13 82.0 167 35.3
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 5.4e-13 80.5 107 55.1
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 3.5e-12 77.8 167 28.7
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.5e-12 77.8 168 28.0
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 4.5e-12 77.4 165 28.5
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 5.9e-12 77.0 104 50.0
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.0e-11 76.3 168 27.4
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 2.3e-11 75.1 51 58.8
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.3e-11 75.1 168 27.4
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.3e-11 75.1 168 27.4
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 3.9e-11 74.3 174 28.7
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.9e-11 74.3 168 28.0
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 5.0e-11 73.9 154 29.2
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 6.6e-11 73.6 168 25.6
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 1.5e-10 72.4 165 28.5
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 3.3e-10 71.2 167 29.3
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 3.3e-10 71.2 48 58.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.3e-10 70.9 205 25.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 5.6e-10 70.5 151 29.8
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 5.6e-10 70.5 166 28.3
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 5.6e-10 70.5 154 30.5
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 7.3e-10 70.1 170 27.1
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 9.5e-10 69.7 168 26.2
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.2e-09 69.3 168 34.5
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 1.2e-09 69.3 168 33.9
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 1.6e-09 68.9 165 28.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.6e-09 68.9 154 29.9
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 2.1e-09 68.6 170 26.5
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 2.8e-09 68.2 151 29.1
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 3.6e-09 67.8 154 31.8
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 6.1e-09 67.0 151 29.1
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 8.0e-09 66.6 169 31.4
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 8.0e-09 66.6 63 47.6
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 1.4e-08 65.9 154 30.5
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.4e-08 65.9 151 29.1
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.4e-08 65.9 164 25.0
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 1.8e-08 65.5 154 29.2
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.8e-08 65.5 168 33.3
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.8e-08 65.5 166 27.1
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.3e-08 65.1 165 26.7
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 2.3e-08 65.1 154 29.9
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 2.3e-08 65.1 154 29.9
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 2.3e-08 65.1 154 29.9
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 2.3e-08 65.1 151 29.1
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 2.3e-08 65.1 154 29.9
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 3.1e-08 64.7 154 29.9
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 3.1e-08 64.7 171 25.1
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 4.0e-08 64.3 154 27.3
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 4.0e-08 64.3 154 26.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 5.2e-08 63.9 171 25.7
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 6.8e-08 63.5 137 29.2
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 8.9e-08 63.2 151 29.1
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 8.9e-08 63.2 165 26.7
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 1.2e-07 62.8 131 31.3
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.2e-07 62.8 148 27.0
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.5e-07 62.4 152 27.6
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 2.6e-07 61.6 157 28.7
Sed0014874 Sechium edule HOM05D007496 ORTHO05D009479 2.6e-07 61.6 172 28.5
VMungo0251G1188 Vigna mungo HOM05D007496 ORTHO05D009479 2.6e-07 61.6 152 31.6
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 3.4e-07 61.2 154 26.6
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 3.4e-07 61.2 166 27.1
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 3.4e-07 61.2 178 30.3
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 5.8e-07 60.5 171 26.9
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 5.8e-07 60.5 154 26.6
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 7.5e-07 60.1 151 28.5
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 7.5e-07 60.1 137 28.5
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 9.8e-07 59.7 168 28.0
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 9.8e-07 59.7 142 27.5
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.3e-06 59.3 173 26.0
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 1.7e-06 58.9 173 27.7
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 2.2e-06 58.5 154 27.9
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 2.2e-06 58.5 158 29.1
ClCG02G014950 Citrullus lanatus HOM05D006888 ORTHO05D008371 3.7e-06 57.8 193 26.9
Lj6g0022088 Lotus japonicus HOM05D007639 ORTHO05D009509 3.7e-06 57.8 120 31.7
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 4.9e-06 57.4 150 24.7
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 4.9e-06 57.4 169 30.2
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 4.9e-06 57.4 173 24.9
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 6.4e-06 57.0 154 28.6
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 6.4e-06 57.0 152 26.3
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 8.3e-06 56.6 133 24.1
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 8.3e-06 56.6 153 26.8
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 8.3e-06 56.6 148 27.0


User provided reference genes

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