Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 3.6e-129 464.9 237 100.0
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.9e-85 319.7 280 61.1
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 5.5e-85 318.2 286 59.4
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.2e-85 317.8 290 57.9
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 6.1e-84 314.7 275 60.0
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 6.7e-83 311.2 286 58.4
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 1.5e-82 310.1 273 58.6
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 4.4e-82 308.5 289 56.7
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 9.7e-82 307.4 281 57.7
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.3e-81 307.0 286 57.3
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 2.2e-81 306.2 287 56.8
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 3.7e-81 305.4 287 56.4
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 1.4e-80 303.5 286 57.7
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 2.6e-79 299.3 287 56.8
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.0e-78 297.4 288 55.9
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.3e-78 297.0 287 56.4
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.9e-78 295.8 287 56.8
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 3.8e-78 295.4 277 56.3
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 3.8e-78 295.4 286 56.3
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 2.5e-77 292.7 289 56.7
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 3.2e-77 292.4 279 56.6
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 4.2e-77 292.0 293 53.9
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 4.2e-77 292.0 290 56.9
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 6.1e-76 288.1 289 55.4
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 8.0e-76 287.7 285 55.8
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 1.4e-75 287.0 289 54.0
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.8e-75 286.6 288 55.9
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 3.0e-75 285.8 289 54.7
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 3.9e-75 285.4 289 55.0
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 8.8e-75 284.3 284 54.6
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.1e-74 283.9 288 54.9
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 2.6e-74 282.7 275 56.0
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 4.4e-74 282.0 295 55.6
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 5.7e-74 281.6 289 54.7
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 4.8e-73 278.5 296 54.1
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 6.3e-73 278.1 286 53.5
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 1.8e-72 276.6 277 55.6
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 7.0e-72 274.6 267 56.6
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 1.2e-71 273.9 306 50.7
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 3.5e-71 272.3 277 53.1
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 4.5e-71 271.9 332 46.4
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 5.0e-70 268.5 280 53.6
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 5.0e-70 268.5 275 54.9
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 2.5e-69 266.2 271 54.6
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 4.7e-68 261.9 285 52.6
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 6.1e-68 261.5 271 51.3
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.0e-67 260.8 271 52.4
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 2.3e-67 259.6 275 53.5
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 2.3e-67 259.6 279 50.9
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 4.0e-67 258.8 271 52.4
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 6.8e-67 258.1 296 51.7
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 9.7e-66 254.2 282 51.4
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 1.7e-65 253.4 270 51.5
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 3.7e-65 252.3 273 49.8
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.4e-64 250.4 278 48.9
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 1.4e-64 250.4 277 50.2
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.8e-64 250.0 182 71.4
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.8e-64 250.0 334 45.2
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.4e-64 249.6 334 45.2
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 7.0e-64 248.1 279 49.8
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 9.1e-64 247.7 290 50.0
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 2.0e-63 246.5 290 49.7
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 1.7e-62 243.4 276 47.5
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 2.2e-62 243.0 284 46.8
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 2.9e-62 242.7 284 48.6
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 6.5e-62 241.5 284 48.2
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 6.5e-62 241.5 198 62.6
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 4.2e-61 238.8 284 47.9
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 2.1e-60 236.5 281 47.0
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 2.7e-60 236.1 258 49.2
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 8.0e-60 234.6 276 48.9
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 8.0e-60 234.6 276 48.9
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 1.0e-59 234.2 291 46.0
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 5.2e-59 231.9 164 68.3
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 9.8e-58 227.6 177 63.8
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 9.8e-58 227.6 210 60.0
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 1.1e-56 224.2 185 62.2
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 1.8e-56 223.4 164 65.9
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 1.6e-55 220.3 177 63.8
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 2.0e-55 219.9 209 55.5
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 1.0e-54 217.6 237 52.3
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 3.8e-54 215.7 164 65.9
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.8e-54 215.7 164 65.9
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 4.2e-53 212.2 244 48.0
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 7.2e-53 211.5 164 63.4
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.2e-52 210.7 164 64.0
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 4.4e-50 202.2 256 46.9
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 9.8e-50 201.1 209 50.2
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.7e-49 200.3 234 46.6
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 3.7e-49 199.1 197 53.8
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 6.6e-46 188.3 234 43.2
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 6.6e-46 188.3 230 46.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.7e-44 182.2 241 44.0
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 5.8e-42 175.3 225 42.2
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 2.4e-40 169.9 100 83.0
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 7.3e-37 158.3 144 59.0
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 4.7e-36 155.6 100 74.0
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 1.8e-35 153.7 166 48.8
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 8.9e-35 151.4 102 68.6
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 9.8e-34 147.9 93 75.3
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 1.9e-32 143.7 128 57.0
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 5.4e-32 142.1 88 76.1
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 3.5e-31 139.4 134 55.2
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.9e-29 133.7 109 58.7
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 6.2e-28 128.6 128 53.1
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 3.1e-27 126.3 140 53.6
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 5.8e-26 122.1 103 59.2
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 1.3e-25 120.9 98 61.2
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 3.7e-25 119.4 97 56.7
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 7.1e-24 115.2 141 46.1
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 5.1e-22 109.0 103 54.4
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.1e-21 107.8 237 32.1
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.5e-21 106.7 305 29.5
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.3e-21 106.3 133 47.4
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.3e-17 94.4 64 68.8
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 4.9e-17 92.4 79 58.2
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-16 88.2 96 52.1
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 6.0e-15 85.5 86 51.2
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.1e-12 77.0 99 46.5
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 2.8e-12 76.6 65 58.5
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 1.2e-10 71.2 65 60.0
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 6.4e-09 65.5 181 29.3
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 6.6e-06 55.5 31 71.0


User provided reference genes

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