Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.2e-44 183.0 100 100.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 1.8e-37 159.1 100 77.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 2.4e-37 158.7 100 86.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 3.1e-37 158.3 100 83.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 8.9e-37 156.8 100 82.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 2.6e-36 155.2 100 75.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.3e-35 152.9 100 75.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.3e-35 152.9 100 82.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.3e-35 152.9 100 82.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.2e-35 152.1 100 82.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 2.2e-35 152.1 100 84.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 6.4e-35 150.6 100 81.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 3.2e-34 148.3 100 81.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 4.2e-34 147.9 100 77.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 4.2e-34 147.9 100 72.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 5.4e-34 147.5 100 75.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 9.2e-34 146.7 100 78.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 1.6e-33 146.0 100 78.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 4.6e-33 144.4 100 79.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 6.0e-33 144.1 100 78.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 7.8e-33 143.7 100 73.0
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 1.7e-32 142.5 100 79.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 1.7e-32 142.5 100 79.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.3e-32 142.1 100 73.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.0e-32 141.7 100 72.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.0e-32 141.7 100 79.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.0e-32 141.7 100 79.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 3.0e-32 141.7 98 77.6
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 6.6e-32 140.6 100 71.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 8.7e-32 140.2 93 72.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 8.7e-32 140.2 100 77.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.5e-31 139.4 100 78.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.5e-31 139.4 100 78.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.9e-31 139.0 100 76.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 2.5e-31 138.7 100 75.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 3.3e-31 138.3 100 77.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.6e-30 136.0 100 75.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 2.1e-30 135.6 100 72.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 3.6e-30 134.8 100 75.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 4.8e-30 134.4 100 76.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 3.1e-29 131.7 100 68.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 4.0e-29 131.3 100 73.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 4.0e-29 131.3 92 77.2
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 74.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 74.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 6.9e-29 130.6 98 73.5
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 73.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.2e-28 129.8 100 62.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 2.6e-28 128.6 100 73.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 9.9e-28 126.7 100 72.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.3e-27 126.3 100 75.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 2.9e-27 125.2 75 77.3
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 8.4e-27 123.6 131 58.0
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.4e-26 122.9 93 75.3
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 1.9e-26 122.5 100 60.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.9e-26 122.5 100 66.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 7.1e-26 120.6 100 67.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 2.1e-25 119.0 100 59.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 4.6e-25 117.9 100 65.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 7.8e-25 117.1 72 76.4
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 1.7e-24 115.9 100 63.0
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.7e-24 115.9 98 67.3
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 2.3e-24 115.5 69 75.4
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 1.1e-23 113.2 100 61.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 2.5e-23 112.1 100 64.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.5e-23 112.1 100 69.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 2.5e-23 112.1 100 69.0
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 4.3e-23 111.3 100 65.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.6e-22 109.4 101 60.4
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.6e-22 109.4 100 61.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 2.8e-22 108.6 102 58.8
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.8e-22 108.6 100 70.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 3.6e-22 108.2 100 67.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 6.2e-22 107.5 91 62.6
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 8.1e-22 107.1 102 58.8
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 3.1e-21 105.1 102 60.8
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 3.1e-21 105.1 100 58.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 6.9e-21 104.0 102 56.9
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 9.0e-21 103.6 96 59.4
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 5.8e-20 100.9 100 56.0
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 9.9e-20 100.1 72 62.5
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 9.9e-20 100.1 72 62.5
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 9.9e-20 100.1 72 62.5
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.2e-19 99.0 100 52.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 1.4e-18 96.3 102 53.9
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 1.4e-18 96.3 102 53.9
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.4e-18 95.5 100 51.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 4.2e-18 94.7 100 55.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 4.6e-17 91.3 100 56.0
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 6.7e-16 87.4 100 55.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 1.1e-15 86.7 100 55.0
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 2.5e-15 85.5 62 67.7
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 4.3e-15 84.7 100 53.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 5.6e-15 84.3 100 52.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 7.4e-15 84.0 53 73.6
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 7.4e-15 84.0 61 83.6
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.6e-14 82.8 48 75.0
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 4.0e-13 78.2 48 72.9
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 5.3e-13 77.8 61 78.7
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 6.9e-13 77.4 90 50.0
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 5.8e-12 74.3 100 54.0
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 5.8e-12 74.3 90 48.9
TAR629G2225 Trochodendron aralioides HOM05D000001 ORTHO05D414751 3.8e-11 71.6 53 83.0
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 1.1e-10 70.1 48 62.5
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 2.5e-10 68.9 93 51.6
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 9.3e-10 67.0 46 63.0
TPR.G22880 Trifolium pratense HOM05D006995 ORTHO05D008870 9.3e-10 67.0 52 76.9
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 1.2e-09 66.6 58 55.2
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 3.5e-09 65.1 81 49.4
MBI15_g24199_MAGBIO Magnolia biondii HOM05D006995 ORTHO05D008870 5.1e-08 61.2 51 78.4
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 5.1e-08 61.2 91 37.4


User provided reference genes

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