Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 1.5e-55 219.2 104 100.0
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 3.6e-49 198.0 103 90.3
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 1.9e-42 175.6 103 80.6
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 3.8e-22 108.2 104 56.7
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.1e-21 106.7 104 55.8
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.7e-20 102.1 100 53.0
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.8e-19 99.4 95 53.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 2.3e-19 99.0 56 76.8
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.3e-19 99.0 74 64.9
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 3.9e-19 98.2 58 77.6
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 3.9e-19 98.2 93 52.7
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 6.7e-19 97.4 57 73.7
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 8.7e-19 97.1 93 54.8
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 8.7e-19 97.1 108 49.1
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 3.3e-18 95.1 58 74.1
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 4.3e-18 94.7 57 70.2
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 5.7e-18 94.4 55 74.5
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 7.4e-18 94.0 56 76.8
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 7.4e-18 94.0 62 67.7
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 1.3e-17 93.2 99 44.4
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 1.3e-17 93.2 99 44.4
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.3e-17 93.2 76 59.2
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.6e-17 92.8 55 76.4
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 1.6e-17 92.8 83 55.4
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.2e-17 92.4 103 44.7
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.2e-17 92.4 103 44.7
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.8e-17 92.0 55 72.7
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 3.7e-17 91.7 55 74.5
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.7e-17 91.7 103 48.5
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 4.8e-17 91.3 55 74.5
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 4.8e-17 91.3 58 72.4
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 8.2e-17 90.5 55 70.9
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 8.2e-17 90.5 54 72.2
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.1e-16 90.1 55 76.4
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.1e-16 90.1 91 50.5
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 1.4e-16 89.7 66 60.6
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.8e-16 89.4 55 72.7
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 1.8e-16 89.4 66 66.7
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 2.4e-16 89.0 55 70.9
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 2.4e-16 89.0 110 45.5
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.1e-16 88.6 104 49.0
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.1e-16 88.6 104 49.0
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 4.1e-16 88.2 55 72.7
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 4.1e-16 88.2 103 45.6
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 5.3e-16 87.8 52 76.9
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.9e-16 87.4 55 72.7
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.9e-16 87.4 55 72.7
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 9.0e-16 87.0 53 73.6
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.2e-15 86.7 74 56.8
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 1.2e-15 86.7 82 53.7
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.5e-15 86.3 86 50.0
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 1.5e-15 86.3 76 56.6
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.0e-15 85.9 55 70.9
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 2.6e-15 85.5 55 70.9
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.6e-15 85.5 102 47.1
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 4.5e-15 84.7 53 73.6
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 5.9e-15 84.3 58 70.7
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 5.9e-15 84.3 108 41.7
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.0e-14 83.6 72 55.6
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.0e-14 83.6 53 73.6
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.0e-14 83.6 65 60.0
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.3e-14 83.2 53 73.6
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.3e-14 83.2 55 65.5
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.3e-14 83.2 55 67.3
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.7e-14 82.8 71 53.5
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.7e-14 82.8 55 63.6
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.7e-14 82.8 63 58.7
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.7e-14 82.8 70 57.1
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.9e-14 82.0 71 54.9
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.8e-14 81.6 72 55.6
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 3.8e-14 81.6 86 51.2
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 6.5e-14 80.9 52 73.1
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 6.5e-14 80.9 53 69.8
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.1e-13 80.1 52 69.2
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 1.1e-13 80.1 63 57.1
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-13 80.1 63 57.1
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-13 80.1 63 57.1
Lj9A35G21 Lonicera japonica HOM05D003561 ORTHO05D234523 1.1e-13 80.1 47 80.9
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 1.1e-13 80.1 53 69.8
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.4e-13 79.7 71 54.9
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.4e-13 79.7 52 73.1
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.9e-13 79.3 52 71.2
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.9e-13 79.3 64 60.9
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.9e-13 79.3 97 48.5
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.9e-13 79.3 97 48.5
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.9e-13 79.3 55 65.5
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.9e-13 79.3 55 65.5
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 2.5e-13 79.0 106 37.7
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.5e-13 79.0 71 54.9
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.2e-13 78.6 71 54.9
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 3.2e-13 78.6 52 69.2
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 3.2e-13 78.6 69 55.1
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 4.2e-13 78.2 56 60.7
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 4.2e-13 78.2 101 42.6
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 4.2e-13 78.2 97 45.4
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 4.2e-13 78.2 108 40.7
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 4.2e-13 78.2 64 60.9
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.5e-13 77.8 63 55.6
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 5.5e-13 77.8 52 69.2
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 7.2e-13 77.4 58 62.1
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 7.2e-13 77.4 52 69.2
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 1.2e-12 76.6 52 71.2
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.2e-12 76.6 54 70.4
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 1.2e-12 76.6 54 64.8
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 1.6e-12 76.3 50 70.0
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 1.6e-12 76.3 52 69.2
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 2.1e-12 75.9 52 69.2
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 2.1e-12 75.9 52 67.3
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.7e-12 75.5 96 43.8
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 3.6e-12 75.1 107 41.1
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 4.6e-12 74.7 53 62.3
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 4.6e-12 74.7 53 58.5
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 4.6e-12 74.7 53 60.4
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 7.9e-12 73.9 66 51.5
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.0e-11 73.6 115 40.0
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.0e-11 73.6 99 47.5
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.0e-11 73.6 56 60.7
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.4e-11 73.2 101 44.6
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 1.4e-11 73.2 68 51.5
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.4e-11 73.2 55 65.5
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.8e-11 72.8 52 65.4
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.8e-11 72.8 107 40.2
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 1.8e-11 72.8 107 40.2
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 2.3e-11 72.4 56 64.3
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 2.3e-11 72.4 108 39.8
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.0e-11 72.0 108 38.0
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.0e-11 72.0 108 38.0
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.9e-11 71.6 49 71.4
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 6.7e-11 70.9 52 63.5
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 8.8e-11 70.5 107 40.2
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 2.5e-10 68.9 85 45.9
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 5.7e-10 67.8 78 39.7
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 9.7e-10 67.0 52 59.6
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 9.7e-10 67.0 79 40.5
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 1.3e-09 66.6 82 43.9
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.2e-09 65.9 53 66.0
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.2e-09 65.9 53 66.0
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.2e-09 65.9 55 54.5
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.8e-09 65.5 55 56.4
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 4.8e-09 64.7 87 42.5
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 3.1e-08 62.0 52 53.8
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 4.1e-08 61.6 75 40.0
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 6.9e-08 60.8 50 58.0
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 7.7e-07 57.4 50 50.0
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 7.7e-07 57.4 51 52.9
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 3.8e-06 55.1 42 59.5


User provided reference genes

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