Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 5.2e-145 517.7 260 100.0
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.4e-94 348.2 211 82.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 9.6e-91 337.4 213 75.6
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.8e-90 335.9 214 74.3
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 6.2e-90 334.7 211 77.3
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.8e-89 333.2 211 76.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 2.4e-89 332.8 211 77.7
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.1e-89 332.4 211 75.8
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 5.3e-89 331.6 214 76.6
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.5e-88 330.1 211 76.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.0e-88 329.7 211 75.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 9.9e-88 327.4 224 73.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.7e-87 326.6 212 74.5
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 4.9e-87 325.1 215 74.0
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 6.4e-87 324.7 215 74.4
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.4e-87 324.3 215 74.4
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.4e-87 324.3 215 74.4
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 8.4e-87 324.3 211 74.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.1e-86 323.9 214 73.8
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.4e-86 322.8 210 73.8
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.2e-86 322.4 221 70.6
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 9.3e-86 320.9 209 76.6
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.2e-85 320.5 211 73.9
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.2e-85 320.5 212 73.6
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.2e-85 320.5 218 72.9
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.1e-85 319.7 207 75.4
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 6.0e-85 318.2 209 75.1
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 7.9e-85 317.8 209 74.6
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 7.9e-85 317.8 209 74.6
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.0e-84 317.4 209 74.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.0e-84 317.4 211 73.9
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.0e-84 317.4 209 75.1
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.8e-84 316.6 211 73.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.8e-84 316.6 211 73.9
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.3e-84 316.2 209 74.6
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.3e-84 316.2 214 71.5
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 5.1e-84 315.1 212 71.7
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 8.7e-84 314.3 209 74.6
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 8.7e-84 314.3 209 74.6
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.5e-83 313.5 211 72.5
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 4.3e-83 312.0 213 71.8
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 4.3e-83 312.0 209 73.2
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 5.6e-83 311.6 218 71.1
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 7.4e-83 311.2 229 69.4
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.8e-81 306.6 208 71.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.8e-81 306.6 209 72.7
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.4e-81 306.2 214 71.0
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.6e-80 302.8 247 63.6
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.5e-80 302.0 203 72.4
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 7.6e-80 301.2 213 69.0
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.2e-79 299.7 217 70.5
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.5e-79 298.1 238 65.5
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.1e-78 297.4 210 69.0
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.1e-78 297.4 213 69.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.1e-78 297.4 224 67.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.9e-78 296.6 232 65.1
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.5e-78 296.2 205 69.3
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 4.2e-78 295.4 209 70.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.6e-77 293.5 212 67.5
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.5e-77 292.4 209 69.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 4.6e-77 292.0 211 67.8
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 6.0e-77 291.6 207 68.6
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 5.1e-76 288.5 209 67.0
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.7e-76 288.1 209 67.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.5e-75 287.0 211 65.9
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 9.7e-75 284.3 231 60.6
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.8e-74 282.7 211 66.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 3.7e-74 282.3 214 64.0
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.3e-74 281.6 213 66.2
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 8.2e-74 281.2 209 66.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 2.4e-73 279.6 211 67.8
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.1e-73 279.3 214 68.2
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 9.0e-73 277.7 211 65.4
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 9.0e-73 277.7 211 65.4
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.0e-71 274.2 212 61.3
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 1.3e-71 273.9 212 65.1
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.2e-70 269.2 207 67.1
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.2e-69 267.3 184 69.6
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.3e-68 263.1 211 60.7
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 2.3e-68 263.1 217 61.8
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.9e-68 262.3 214 64.5
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 8.7e-68 261.2 193 64.8
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.9e-65 251.5 215 57.7
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 9.1e-65 251.1 185 69.2
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.2e-64 250.8 212 63.7
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 5.0e-63 245.4 210 61.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 6.5e-63 245.0 210 60.5
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 7.2e-62 241.5 208 59.1
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.0e-59 233.4 201 57.2
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-58 230.7 209 58.9
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.7e-58 229.2 209 58.4
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.3e-58 228.4 212 52.8
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 8.2e-58 228.0 213 55.9
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.8e-57 226.9 211 53.6
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.6e-56 223.0 207 56.5
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.0e-55 221.1 199 58.3
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-55 220.7 207 56.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.5e-55 218.4 216 53.7
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 2.1e-53 213.4 209 54.1
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-52 210.3 207 56.0
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.4e-49 199.9 228 48.7
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 3.1e-49 199.5 178 58.4
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.9e-48 195.3 233 49.4
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.0e-47 194.5 132 75.8
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 6.5e-47 191.8 197 51.3
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.6e-45 187.2 216 48.6
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.1e-45 186.8 137 69.3
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.7e-45 186.4 216 46.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.2e-43 181.0 217 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.3e-43 179.5 208 45.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 3.3e-43 179.5 222 47.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 5.7e-43 178.7 159 59.1
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 7.5e-43 178.3 203 46.8
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.7e-42 177.2 124 71.0
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.7e-42 176.0 214 49.1
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.7e-40 169.9 213 44.6
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 2.7e-40 169.9 219 46.1
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.5e-40 169.5 213 44.6
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 6.5e-39 165.2 171 56.1
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.5e-38 162.2 242 42.6
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.6e-37 160.6 118 61.9
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.0e-36 156.4 239 38.9
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.0e-36 156.0 211 45.0
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 2.6e-35 153.3 207 41.1
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 4.4e-35 152.5 204 43.6
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.3e-34 151.0 101 73.3
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-34 150.6 204 43.6
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 6.3e-34 148.7 170 45.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 7.0e-33 145.2 212 42.0
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.6e-32 144.1 149 52.3
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.7e-31 140.6 121 61.2
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 6.5e-31 138.7 220 38.6
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 7.2e-30 135.2 114 58.8
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 6.1e-29 132.1 93 71.0
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.0e-29 131.7 177 44.1
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.4e-28 131.0 95 67.4
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.5e-27 127.5 106 53.8
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.8e-25 120.6 93 65.6
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.1e-25 119.4 74 71.6
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-24 117.5 76 76.3
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.5e-19 100.9 71 64.8
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.2e-18 97.1 87 62.1
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 3.2e-17 93.2 171 37.4
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-17 92.0 97 41.2
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 6.0e-16 89.0 73 65.8
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 2.8e-13 80.1 96 45.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.4e-09 65.9 43 67.4
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 4.6e-08 62.8 153 31.4
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 6.0e-08 62.4 42 64.3


User provided reference genes

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