Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.3e-129 466.8 317 100.0
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 3.3e-77 292.7 332 70.2
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 6.2e-76 288.5 335 60.6
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.1e-75 286.2 338 57.4
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.9e-72 276.9 287 65.9
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 3.2e-72 276.2 326 58.9
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.1e-71 273.5 327 58.1
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.9e-70 269.2 325 53.2
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 8.2e-68 261.5 355 51.0
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.1e-67 259.6 334 59.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 9.0e-67 258.1 334 58.4
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.5e-66 257.3 327 54.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.0e-65 254.6 333 54.7
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.1e-64 251.1 334 53.9
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.6e-63 246.1 324 49.4
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.0e-62 243.0 324 54.0
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.0e-62 243.0 324 52.2
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 8.7e-62 241.5 328 52.7
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-61 241.1 331 56.2
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.1e-61 241.1 279 61.3
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 5.7e-61 238.8 333 59.2
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.2e-60 236.9 335 54.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 6.3e-60 235.3 330 57.0
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 8.2e-60 235.0 365 52.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.4e-59 234.2 330 52.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.4e-59 233.4 324 52.5
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.4e-59 233.4 315 51.4
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 3.1e-59 233.0 312 51.0
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.1e-59 232.6 332 48.2
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 4.5e-58 229.2 315 55.2
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 5.9e-58 228.8 333 55.9
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.0e-57 228.0 331 54.1
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.2e-57 226.9 336 51.8
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 6.5e-57 225.3 303 54.1
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 8.5e-57 224.9 331 52.6
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 8.5e-57 224.9 334 53.0
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.4e-56 224.2 309 54.4
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-56 224.2 330 58.2
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.9e-56 223.8 332 51.8
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.2e-56 223.0 285 53.0
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 4.2e-56 222.6 315 55.6
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.2e-56 221.9 313 53.4
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.2e-55 221.1 311 53.4
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.1e-55 220.3 316 49.1
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 2.1e-55 220.3 331 50.8
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.6e-55 219.5 330 51.5
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.9e-55 218.4 309 54.0
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.0e-54 218.0 308 49.4
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-54 217.2 326 45.1
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.3e-54 216.9 340 46.2
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 5.1e-54 215.7 316 45.9
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 6.7e-54 215.3 331 48.9
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 8.8e-54 214.9 292 54.5
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 8.8e-54 214.9 326 50.0
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 8.8e-54 214.9 341 50.4
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 7.4e-53 211.8 249 71.1
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.7e-53 211.5 327 50.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.3e-52 211.1 314 44.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 3.7e-52 209.5 331 50.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 3.7e-52 209.5 320 52.2
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.8e-51 207.2 331 48.0
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 6.9e-51 205.3 332 44.0
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.5e-50 204.1 297 44.4
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.0e-50 203.8 325 48.0
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 8.5e-49 198.4 282 58.9
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 8.5e-49 198.4 282 58.2
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.4e-48 197.6 327 45.9
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 3.2e-48 196.4 303 56.1
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.1e-47 193.7 328 46.0
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 6.1e-47 192.2 300 56.7
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.3e-46 190.3 310 48.1
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.0e-46 189.9 327 51.7
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 8.8e-46 188.3 500 38.2
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.1e-45 188.0 305 47.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.5e-45 187.6 296 47.0
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.0e-45 187.2 405 39.8
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.0e-45 187.2 335 44.8
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.6e-45 186.8 291 50.5
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 7.4e-45 185.3 321 45.8
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.8e-43 180.6 300 49.0
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.6e-42 176.8 290 41.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.6e-42 176.8 324 44.8
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 3.5e-42 176.4 180 63.9
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 4.5e-42 176.0 328 40.2
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.3e-41 174.5 249 56.2
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.7e-41 174.1 320 41.2
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.7e-41 174.1 321 39.9
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.2e-41 173.7 320 41.6
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.1e-40 171.4 324 48.1
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.5e-40 171.0 232 48.7
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-38 164.1 330 42.4
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 8.8e-38 161.8 237 45.1
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-37 161.4 330 38.8
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.0e-37 160.6 255 51.4
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 2.0e-37 160.6 318 40.6
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 5.7e-37 159.1 323 40.2
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.5e-37 158.7 259 46.3
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 9.7e-37 158.3 275 38.5
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 9.7e-37 158.3 279 46.6
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 9.7e-37 158.3 272 49.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.4e-35 153.7 303 43.9
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.1e-35 153.3 328 35.7
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 9.1e-35 151.8 339 36.3
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.6e-34 151.0 283 38.2
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.6e-34 151.0 283 38.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 3.5e-34 149.8 315 35.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.5e-33 145.2 240 46.2
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.0e-30 138.3 346 36.4
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 3.0e-30 136.7 316 34.8
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 5.2e-30 136.0 285 36.1
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.0e-29 134.0 325 36.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.0e-29 134.0 275 35.6
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.4e-29 133.3 279 35.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 7.5e-29 132.1 343 39.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 9.8e-29 131.7 299 34.1
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.1e-27 128.3 261 39.1
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 5.9e-26 122.5 318 41.5
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 2.9e-25 120.2 275 32.7
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.9e-24 117.5 341 32.0
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 4.2e-24 116.3 343 33.2
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.8e-23 113.6 229 37.1
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 8.0e-23 112.1 230 33.9
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.3e-22 110.5 119 58.0
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.0e-22 110.2 134 49.3
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.7e-20 104.4 307 30.9
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.7e-20 103.2 200 37.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.1e-19 99.8 261 50.6
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.2e-15 88.2 285 36.1
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.6e-15 87.8 130 44.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.8e-15 87.0 75 61.3
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 2.3e-14 84.0 202 31.2
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.0e-13 80.9 122 41.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 9.8e-13 78.6 134 45.5
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.3e-12 78.2 144 47.2
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 4.6e-10 69.7 288 30.6
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.9e-09 66.6 98 44.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 5.0e-09 66.2 288 28.1
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 8.6e-09 65.5 88 46.6
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-08 64.3 75 46.7
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.6e-07 61.2 46 65.2
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 8.0e-07 58.9 78 48.7


User provided reference genes

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