Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.2e-219 766.1 386 100.0
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 5.8e-193 677.6 386 86.8
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 8.7e-189 663.7 383 85.9
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.8e-186 656.0 384 83.9
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 5.3e-186 654.4 380 85.8
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.5e-185 652.9 380 85.5
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.0e-181 638.6 383 83.3
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 2.5e-180 635.6 378 83.6
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.3e-180 635.2 382 82.2
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.3e-180 634.8 387 83.5
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 2.4e-178 629.0 381 81.9
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 3.1e-178 628.6 379 81.8
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 5.3e-178 627.9 397 80.4
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 6.9e-178 627.5 383 81.7
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.2e-177 626.7 379 82.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.5e-177 626.3 382 80.6
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 3.4e-177 625.2 380 81.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 2.2e-176 622.5 381 81.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.9e-176 621.3 380 80.8
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 8.4e-176 620.5 408 76.7
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.4e-175 619.8 381 80.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 4.2e-175 618.2 384 79.9
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 7.1e-175 617.5 375 80.3
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 2.7e-174 615.5 377 80.6
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 2.7e-174 615.5 375 80.3
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.5e-174 615.1 380 80.8
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.0e-173 613.6 375 80.3
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.3e-173 613.2 383 78.6
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.8e-173 612.8 391 78.3
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.3e-173 612.5 379 80.2
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 3.0e-173 612.1 383 77.8
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 5.1e-173 611.3 383 77.8
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 8.7e-173 610.5 383 78.1
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.1e-172 610.1 378 81.5
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.1e-172 610.1 379 80.2
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 2.5e-172 609.0 383 77.5
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 4.3e-172 608.2 383 78.9
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 5.7e-172 607.8 386 77.7
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 5.7e-172 607.8 376 80.6
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 7.4e-172 607.4 381 79.0
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 9.6e-172 607.1 376 79.5
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.6e-171 606.3 379 80.7
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 1.6e-171 606.3 379 79.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 3.7e-171 605.1 376 79.0
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 3.7e-171 605.1 381 78.7
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.8e-171 604.7 392 77.6
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.1e-170 603.6 374 79.1
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 4.1e-170 601.7 379 79.9
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 5.3e-170 601.3 383 77.5
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 2.0e-169 599.4 381 77.7
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.6e-169 599.0 385 78.2
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 5.9e-169 597.8 379 79.4
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.3e-168 596.7 381 77.2
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.2e-168 595.9 382 76.4
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.1e-167 593.6 383 76.5
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.9e-167 592.8 374 77.5
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 7.2e-167 590.9 371 79.5
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 3.6e-166 588.6 382 75.7
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.0e-165 587.0 373 78.0
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.1e-165 584.7 359 82.7
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-164 583.6 385 77.1
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 5.7e-164 581.3 379 77.3
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 7.4e-164 580.9 370 78.6
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 2.2e-163 579.3 384 75.3
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 1.8e-162 576.2 380 75.3
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 8.5e-160 567.4 380 75.5
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 6.1e-158 561.2 376 76.3
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 7.9e-158 560.8 391 74.9
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 7.9e-158 560.8 391 74.9
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-157 560.1 355 79.4
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 1.8e-154 549.7 359 76.3
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.2e-153 547.0 380 74.2
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 7.7e-153 544.3 376 73.1
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 2.2e-152 542.7 369 72.4
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-152 542.7 351 76.9
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 2.9e-152 542.3 376 72.3
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.2e-151 538.5 369 71.5
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.1e-150 536.2 374 70.3
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 6.1e-150 534.6 387 69.0
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.8e-149 533.1 369 71.3
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 1.8e-149 533.1 369 71.3
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.9e-149 531.9 376 70.5
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.6e-148 529.3 373 71.3
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 5.7e-148 528.1 380 69.7
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.4e-146 523.5 374 68.2
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.6e-145 520.0 336 78.0
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 7.7e-145 517.7 376 67.8
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.0e-144 517.3 378 67.2
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 2.2e-144 516.2 375 68.8
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.9e-144 515.8 335 76.4
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 8.8e-141 504.2 374 67.4
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 4.4e-140 501.9 374 66.3
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 9.7e-140 500.7 350 71.7
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.2e-139 499.6 303 81.5
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.8e-138 496.5 378 65.6
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 5.9e-137 491.5 379 65.7
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 2.1e-134 483.0 374 64.2
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.1e-134 481.5 374 63.6
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.7e-132 474.9 374 63.1
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 4.8e-131 471.9 376 63.8
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-128 463.8 424 60.4
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.9e-127 459.9 375 62.1
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.5e-124 450.3 376 59.6
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.3e-123 447.2 380 59.2
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.3e-123 447.2 384 61.7
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.0e-121 439.9 390 57.4
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.1e-119 434.1 367 59.4
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 2.3e-117 426.4 353 63.5
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 8.9e-117 424.5 363 60.1
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 7.5e-116 421.4 354 61.6
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.3e-115 420.6 273 75.8
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.4e-114 416.4 352 63.4
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-113 412.9 346 60.1
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 4.7e-110 402.1 264 75.8
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.6e-108 396.4 365 56.2
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 9.8e-108 394.4 259 74.9
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.6e-102 375.9 368 56.5
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 6.2e-94 348.6 225 76.9
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.4e-93 347.4 354 53.4
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 3.3e-87 326.2 228 68.4
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.1e-86 323.6 316 58.5
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 8.1e-78 295.0 202 76.7
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-64 251.1 162 79.0
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 8.7e-64 248.4 187 66.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 5.7e-55 219.2 330 40.3
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.7e-51 207.6 201 57.7
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 4.8e-46 189.5 118 78.0
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.8e-45 187.6 157 61.1
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 4.5e-44 183.0 119 74.8
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 7.7e-44 182.2 157 55.4
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.0e-43 181.8 161 60.9
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 5.0e-43 179.5 117 76.9
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 6.5e-43 179.1 109 78.9
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 8.5e-43 178.7 117 76.1
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-41 173.7 111 75.7
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 4.4e-39 166.4 106 77.4
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 9.7e-39 165.2 117 70.1
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 2.2e-38 164.1 141 61.7
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 2.8e-38 163.7 144 56.9
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 9.1e-37 158.7 112 69.6
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 2.2e-30 137.5 104 71.2
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 5.9e-28 129.4 91 72.5
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.1e-25 120.9 73 84.9
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 6.1e-25 119.4 91 69.2
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 6.7e-24 115.9 79 70.9
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 2.6e-23 114.0 350 26.9
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 4.4e-23 113.2 344 26.5
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 2.4e-21 107.5 75 69.3
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 2.4e-21 107.5 75 69.3
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 9.1e-21 105.5 74 67.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.6e-20 104.8 105 57.1
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 6.5e-19 99.4 110 50.9
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 2.7e-17 94.0 60 73.3
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.1e-17 92.8 63 76.2
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 2.3e-16 90.9 73 64.4
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 4.0e-16 90.1 73 65.8
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 4.0e-16 90.1 62 71.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 4.0e-16 90.1 62 71.0
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 4.0e-16 90.1 62 71.0
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 4.0e-16 90.1 62 71.0
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 8.8e-16 89.0 53 81.1
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 2.6e-15 87.4 62 71.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 3.4e-15 87.0 66 65.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 7.5e-15 85.9 58 70.7
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 8.3e-14 82.4 141 39.0
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 2.7e-12 77.4 58 65.5
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 2.9e-11 73.9 75 54.7
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 8.6e-11 72.4 70 54.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 4.7e-09 66.6 345 27.0
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 1.2e-07 62.0 60 58.3
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 1.2e-07 62.0 54 61.1
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 1.5e-07 61.6 371 24.3
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 3.4e-07 60.5 335 25.7
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 5.7e-07 59.7 44 61.4
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 1.7e-06 58.2 42 64.3
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 1.7e-06 58.2 336 27.4
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 2.2e-06 57.8 352 24.4
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 3.7e-06 57.0 53 52.8
arahy.Tifrunner.gnm1.ann1.DRRV3Z Arachis hypogaea HOM05D000129 ORTHO05D014893 6.3e-06 56.2 44 59.1
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 8.3e-06 55.8 319 24.8


User provided reference genes

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