Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1879.4 963 100.0
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1377.5 949 73.7
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1342.8 945 71.2
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1314.3 926 71.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1307.0 945 68.9
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1297.3 946 68.9
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1285.4 947 68.8
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1247.6 951 65.7
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1245.3 1005 64.1
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1236.1 951 64.9
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1233.8 953 65.9
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1231.5 944 66.9
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1224.2 946 64.1
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1221.1 951 64.8
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1210.7 946 65.2
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1209.1 946 64.7
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1208.4 948 64.3
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1206.0 946 64.3
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1205.3 946 64.7
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1202.2 947 64.2
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1201.4 946 64.8
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1199.5 948 64.2
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1196.0 951 63.5
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1193.7 951 63.2
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1193.7 946 63.6
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1192.6 949 64.0
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1190.6 948 63.7
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1189.9 946 64.5
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1189.1 946 66.0
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1187.6 1015 59.6
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1183.7 947 62.8
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1182.9 945 64.0
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1179.9 957 62.2
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1172.9 912 65.9
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1172.1 947 62.3
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1172.1 948 63.2
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1172.1 958 62.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1167.1 946 62.4
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1166.4 946 62.3
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1166.4 952 63.1
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1164.4 946 62.5
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1162.1 947 62.8
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1159.1 947 62.3
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1156.7 949 62.6
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1153.7 948 61.9
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1149.0 946 61.9
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 946 62.9
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1144.0 892 64.8
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1140.6 946 62.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1140.6 949 63.8
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1139.0 946 61.6
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1139.0 950 61.9
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1135.9 949 62.3
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1134.4 947 60.5
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1134.0 947 61.5
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1132.1 948 61.7
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1131.7 946 61.7
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1124.8 947 60.1
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1123.2 947 60.7
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1120.9 945 59.7
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1115.1 947 60.5
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1109.0 882 64.3
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1108.6 949 61.6
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1104.4 949 59.4
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1099.3 960 60.3
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 7.9e-311 1070.5 947 58.6
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 1.2e-308 1063.1 947 58.4
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 2.6e-306 1055.4 948 57.1
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 3.3e-306 1055.0 951 57.7
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 4.4e-306 1054.7 1133 53.4
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 7.4e-306 1053.9 977 56.6
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 5.3e-304 1047.7 948 57.9
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 5.3e-304 1047.7 948 57.9
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 2.0e-303 1045.8 947 57.8
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 4.5e-303 1044.6 1423 44.1
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 1.7e-302 1042.7 948 58.8
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 4.2e-301 1038.1 952 58.6
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 2.0e-298 1029.2 949 56.9
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 8.0e-292 1007.3 949 56.1
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 1.2e-290 1003.4 953 56.2
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.2e-281 972.6 950 53.4
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 1.2e-279 966.8 947 54.3
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 3.5e-255 885.6 801 58.8
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.0e-254 884.0 999 49.3
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 8.6e-254 880.9 956 49.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.1e-247 859.8 774 56.2
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 4.6e-247 858.6 947 48.3
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.7e-225 786.9 971 46.4
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.1e-221 774.2 670 58.1
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 2.6e-218 763.1 685 57.8
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.9e-213 746.9 893 46.9
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 4.5e-210 735.7 659 59.2
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.0e-209 734.6 656 59.5
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.0e-209 734.6 656 59.5
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.3e-193 681.0 588 59.2
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 7.0e-187 658.7 623 56.8
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 3.5e-186 656.4 641 55.1
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.5e-173 614.4 943 39.4
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 2.2e-172 610.5 492 63.8
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 9.2e-163 578.6 963 38.1
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.8e-150 537.7 950 34.7
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 7.3e-136 489.2 986 34.2
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 7.3e-136 489.2 986 34.2
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.1e-115 422.2 432 53.9
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 2.6e-101 374.4 995 28.5
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.3e-86 323.6 257 63.0
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 3.6e-58 231.1 234 50.4
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.0e-40 172.2 115 70.4
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 6.0e-29 134.0 132 46.2
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 4.3e-27 127.9 280 31.1
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 2.2e-15 89.0 95 42.1
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.9e-14 85.9 71 66.2
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.4e-14 85.5 85 47.1
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.1e-10 72.4 47 74.5
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 4.0e-09 68.2 64 46.9
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.4e-08 65.1 42 69.0
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 9.9e-08 63.5 37 73.0
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 3.8e-07 61.6 85 41.2
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 6.4e-07 60.8 37 75.7
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 1.9e-06 59.3 35 80.0


User provided reference genes

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