Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 1.0e-163 580.1 309 100.0
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 3.3e-82 309.3 321 57.0
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 1.4e-80 303.9 318 58.2
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 4.1e-80 302.4 323 55.4
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 1.5e-79 300.4 321 56.1
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.0e-79 300.1 321 55.1
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.2e-76 290.8 329 54.1
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 3.0e-75 286.2 311 54.0
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 1.5e-74 283.9 329 53.5
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 5.7e-74 282.0 310 53.5
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 1.3e-73 280.8 327 54.1
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 1.7e-73 280.4 314 55.4
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.7e-73 280.4 302 54.0
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.2e-73 280.0 312 53.2
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.2e-73 280.0 312 53.2
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.8e-73 279.6 306 54.2
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 1.4e-72 277.3 322 53.7
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 5.3e-72 275.4 313 55.3
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 1.6e-71 273.9 343 55.7
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 3.5e-71 272.7 295 54.6
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 5.9e-71 271.9 305 53.1
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 1.0e-70 271.2 296 53.7
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 1.3e-70 270.8 305 52.1
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 1.3e-70 270.8 312 51.6
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.9e-70 269.6 299 52.8
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.0e-70 268.9 327 51.7
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 6.5e-70 268.5 322 51.6
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 6.5e-70 268.5 316 52.2
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 6.5e-70 268.5 345 50.4
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 1.1e-69 267.7 323 50.5
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 1.9e-69 266.9 325 51.1
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 2.5e-69 266.5 333 50.8
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 3.2e-69 266.2 330 50.0
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 5.5e-69 265.4 321 50.2
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 1.6e-68 263.8 318 50.0
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 1.6e-68 263.8 245 64.5
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 1.6e-68 263.8 277 57.0
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 2.1e-68 263.5 327 51.4
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 3.6e-68 262.7 317 48.6
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 6.1e-68 261.9 335 52.8
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 8.0e-68 261.5 312 52.2
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.0e-67 261.2 319 49.2
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 1.4e-67 260.8 311 52.1
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 1.4e-67 260.8 319 50.8
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 5.2e-67 258.8 315 52.1
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 6.7e-67 258.5 316 47.5
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 8.8e-67 258.1 314 51.6
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.1e-66 257.7 304 53.3
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 1.5e-66 257.3 321 49.2
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 2.0e-66 256.9 321 48.6
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 2.6e-66 256.5 334 49.4
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 1.3e-65 254.2 319 47.6
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 2.8e-65 253.1 266 57.1
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 4.8e-65 252.3 318 50.9
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 6.3e-65 251.9 314 52.5
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 6.3e-65 251.9 316 49.1
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 8.2e-65 251.5 275 55.6
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 4.1e-64 249.2 324 48.1
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 5.3e-64 248.8 311 50.2
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 4.5e-63 245.7 320 51.9
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 1.0e-62 244.6 347 47.3
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 1.3e-62 244.2 305 49.2
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 1.7e-62 243.8 319 49.2
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 5.0e-62 242.3 312 49.7
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 1.1e-61 241.1 344 46.8
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.2e-61 239.2 344 46.2
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 1.6e-60 237.3 340 47.1
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.6e-60 237.3 354 46.3
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 3.6e-60 236.1 352 45.7
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.6e-60 236.1 351 46.2
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.0e-59 234.6 317 50.5
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.4e-59 234.2 337 46.6
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 2.3e-59 233.4 341 46.6
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 2.3e-59 233.4 309 46.9
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 3.0e-59 233.0 349 45.8
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 5.2e-59 232.3 314 48.7
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 5.2e-59 232.3 311 46.0
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 1.2e-58 231.1 350 44.6
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 4.4e-58 229.2 311 46.3
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 7.5e-58 228.4 328 49.7
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.7e-54 217.2 323 43.0
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.9e-54 216.5 323 43.7
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 6.5e-54 215.3 331 44.7
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 8.5e-54 214.9 314 44.6
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 5.5e-53 212.2 246 52.8
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 7.2e-53 211.8 312 42.6
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 1.6e-52 210.7 196 62.8
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 8.0e-52 208.4 311 43.7
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.8e-51 207.2 321 43.3
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 6.3e-49 198.7 243 52.7
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.1e-48 198.0 228 51.8
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 1.8e-48 197.2 260 48.5
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 3.1e-48 196.4 339 41.9
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 5.9e-47 192.2 301 46.2
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 7.7e-47 191.8 335 41.2
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 4.7e-44 182.6 346 39.0
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 4.0e-43 179.5 312 39.7
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 6.8e-43 178.7 293 41.6
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.3e-41 174.5 312 39.7
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 4.9e-41 172.6 229 49.3
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 3.9e-38 162.9 248 43.1
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 6.6e-38 162.2 204 46.6
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.5e-34 151.0 212 45.8
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.7e-33 147.5 158 52.5
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.8e-28 130.2 222 41.9
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.1e-27 128.3 289 36.7
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-26 124.8 254 37.8
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 2.6e-26 123.6 255 38.0
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 2.6e-26 123.6 255 38.0
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 2.6e-26 123.6 255 38.0
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.4e-26 122.9 203 41.9
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 4.4e-26 122.9 259 36.7
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.4e-26 122.9 216 38.9
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 9.8e-26 121.7 234 33.8
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.3e-25 121.3 229 38.9
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 2.2e-25 120.6 217 40.1
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.9e-25 120.2 227 35.7
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 6.4e-25 119.0 233 33.5
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.4e-24 117.9 233 33.9
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 2.4e-24 117.1 229 37.6
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 2.1e-23 114.0 228 33.8
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 2.1e-23 114.0 228 33.8
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 4.6e-23 112.8 228 33.3
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 2.3e-22 110.5 233 33.0
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 3.9e-22 109.8 228 33.8
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 6.6e-22 109.0 228 33.8
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 1.1e-21 108.2 249 35.7
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.1e-21 108.2 257 34.6
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 5.6e-21 105.9 231 33.3
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 5.6e-21 105.9 233 33.5
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.5e-18 97.8 228 33.3
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 3.5e-15 86.7 231 29.0
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 3.5e-15 86.7 231 29.0
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.0e-14 85.1 188 32.4
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-12 78.2 176 30.1
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-12 78.2 176 30.1
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 3.6e-12 76.6 167 31.1
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 8.9e-11 72.0 124 41.9
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 3.8e-09 66.6 173 29.5
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.2e-08 63.5 96 39.6
Aa31LG5G2330 Aethionema arabicum HOM05D000592 ORTHO05D001485 1.0e-06 58.5 77 39.0
CARHR251010 Cardamine hirsuta HOM05D000592 ORTHO05D001485 1.0e-06 58.5 111 32.4
Carub.0004s3064 Capsella rubella HOM05D000592 ORTHO05D000900 1.7e-06 57.8 147 33.3
DCAR_005860 Daucus carota HOM05D000592 ORTHO05D001485 1.7e-06 57.8 95 38.9
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 2.3e-06 57.4 129 31.8
Aqoxy5G00422 Aquilegia oxysepala HOM05D000592 ORTHO05D001485 2.3e-06 57.4 77 37.7
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-06 57.4 145 29.7
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-06 57.4 145 29.7
TWI79G0473 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 2.3e-06 57.4 77 39.0
DCAR_024179 Daucus carota HOM05D000592 ORTHO05D001485 3.0e-06 57.0 261 25.3
THA.LOC104817528 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 3.0e-06 57.0 184 29.9
PGR044G0675 Punica granatum HOM05D000592 ORTHO05D000900 3.9e-06 56.6 65 49.2
BcaNung00336 Brassica carinata HOM05D000592 ORTHO05D001485 5.1e-06 56.2 270 25.9
Haze_04665 Corylus avellana HOM05D000592 ORTHO05D001485 5.1e-06 56.2 74 41.9
Potri.005G213400 Populus trichocarpa HOM05D000592 ORTHO05D001485 6.6e-06 55.8 77 40.3
Atru.chr5.1495 Acer truncatum HOM05D000592 ORTHO05D001485 8.7e-06 55.5 77 39.0
BcaB02g08725 Brassica carinata HOM05D000592 ORTHO05D000900 8.7e-06 55.5 53 50.9
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 8.7e-06 55.5 145 29.0
BcaC09g50157 Brassica carinata HOM05D000592 ORTHO05D001485 8.7e-06 55.5 111 36.0
BolC1t02767H Brassica oleracea HOM05D000592 ORTHO05D001485 8.7e-06 55.5 111 36.0
COL.COLO4_35251 Corchorus olitorius HOM05D001877 ORTHO05D001886 8.7e-06 55.5 84 34.5
Sabra05G0163100 Salix brachista HOM05D000592 ORTHO05D001485 8.7e-06 55.5 78 39.7
Sc17g0001230 Simmondsia chinensis HOM05D000592 ORTHO05D001485 8.7e-06 55.5 71 40.8
TAR362G0063 Trochodendron aralioides HOM05D000592 ORTHO05D001485 8.7e-06 55.5 74 43.2
HPP92_024844 Vanilla planifolia HOM05D000592 ORTHO05D001485 8.7e-06 55.5 86 37.2
HPP92_026614 Vanilla planifolia HOM05D000592 ORTHO05D000900 8.7e-06 55.5 86 37.2


User provided reference genes

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