Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C388T18 Lonicera japonica HOM05D003602 ORTHO05D020334 8.9e-53 209.9 100 100.0
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 2.4e-37 158.7 100 81.0
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 3.3e-31 138.3 100 69.0
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 4.3e-31 137.9 100 69.0
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 1.3e-30 136.3 100 69.0
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 1.6e-30 136.0 100 69.0
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 2.1e-30 135.6 100 68.0
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.8e-30 135.2 100 68.0
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 2.8e-30 135.2 100 68.0
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 3.6e-30 134.8 100 68.0
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 3.6e-30 134.8 100 66.0
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 4.8e-30 134.4 100 67.0
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 6.2e-30 134.0 100 67.0
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 8.1e-30 133.7 100 66.0
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 1.4e-29 132.9 100 67.0
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.4e-29 132.9 100 66.0
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.8e-29 132.5 100 66.0
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 3.1e-29 131.7 100 68.0
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 4.0e-29 131.3 100 65.0
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 4.0e-29 131.3 99 66.7
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 6.9e-29 130.6 100 67.0
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 6.9e-29 130.6 100 67.0
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 6.9e-29 130.6 100 66.0
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 6.9e-29 130.6 100 66.0
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 9.0e-29 130.2 100 67.0
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 9.0e-29 130.2 100 65.0
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 1.2e-28 129.8 100 67.0
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 1.5e-28 129.4 100 65.0
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 2.6e-28 128.6 100 65.0
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 2.6e-28 128.6 100 66.0
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.4e-28 128.3 100 64.0
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 4.4e-28 127.9 100 65.0
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 5.8e-28 127.5 100 66.0
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 5.8e-28 127.5 100 66.0
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 7.6e-28 127.1 100 63.0
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 7.6e-28 127.1 100 63.0
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 9.9e-28 126.7 100 65.0
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 1.3e-27 126.3 100 65.0
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.7e-27 125.9 100 65.0
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 1.7e-27 125.9 100 64.0
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 1.7e-27 125.9 100 64.0
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 2.2e-27 125.6 99 63.6
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 3.8e-27 124.8 100 63.0
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 4.9e-27 124.4 100 63.0
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 8.4e-27 123.6 100 65.0
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 8.4e-27 123.6 99 60.6
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.1e-26 123.2 100 64.0
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 1.1e-26 123.2 100 64.0
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 1.4e-26 122.9 99 60.6
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.4e-26 122.9 100 64.0
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 1.9e-26 122.5 100 60.0
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 2.4e-26 122.1 100 61.0
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 2.4e-26 122.1 100 64.0
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 3.2e-26 121.7 100 61.0
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 3.2e-26 121.7 100 62.0
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 4.2e-26 121.3 98 60.2
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 4.2e-26 121.3 98 63.3
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 4.2e-26 121.3 100 64.0
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 7.1e-26 120.6 101 62.4
TAR375G0657 Trochodendron aralioides HOM05D003602 ORTHO05D004808 7.1e-26 120.6 100 64.0
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.2e-25 119.8 99 58.6
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 1.2e-25 119.8 99 58.6
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 1.2e-25 119.8 100 63.0
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 1.2e-25 119.8 100 61.0
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 1.2e-25 119.8 100 62.0
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 1.6e-25 119.4 100 60.0
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 2.1e-25 119.0 100 59.0
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 2.1e-25 119.0 99 61.6
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 2.1e-25 119.0 100 61.0
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 2.7e-25 118.6 100 61.0
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 3.5e-25 118.2 99 59.6
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 3.5e-25 118.2 99 60.6
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 3.5e-25 118.2 100 60.0
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 3.5e-25 118.2 100 61.0
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 4.6e-25 117.9 100 58.0
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 6.0e-25 117.5 99 57.6
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 6.0e-25 117.5 99 58.6
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 6.0e-25 117.5 99 58.6
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 6.0e-25 117.5 99 58.6
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 7.8e-25 117.1 100 60.0
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 7.8e-25 117.1 100 60.0
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.0e-24 116.7 99 57.6
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.0e-24 116.7 99 57.6
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 1.0e-24 116.7 100 62.0
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.3e-24 116.3 100 59.0
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 1.3e-24 116.3 100 59.0
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 1.7e-24 115.9 100 56.0
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.7e-24 115.9 100 60.0
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 3.0e-24 115.2 99 59.6
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.0e-24 115.2 99 59.6
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.0e-24 115.2 99 59.6
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.0e-24 115.2 99 59.6
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.0e-24 115.2 99 59.6
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.0e-24 115.2 99 59.6
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 3.9e-24 114.8 100 58.0
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 3.9e-24 114.8 100 57.0
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 5.1e-24 114.4 99 59.6
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 8.7e-24 113.6 99 56.6
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 1.5e-23 112.8 99 57.6
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 1.9e-23 112.5 100 59.0
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 3.3e-23 111.7 100 61.0
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 4.3e-23 111.3 99 55.6
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 5.6e-23 110.9 96 62.5
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.6e-22 109.4 100 59.0
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 6.2e-22 107.5 96 60.4
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 6.2e-22 107.5 96 60.4
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 1.1e-21 106.7 100 54.0
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 1.4e-21 106.3 100 55.0
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 1.8e-21 105.9 100 59.0
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 3.1e-21 105.1 96 59.4
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 1.2e-20 103.2 75 72.0
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.0e-20 102.4 83 62.7
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 4.5e-20 101.3 96 56.2
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 4.5e-20 101.3 101 53.5
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 7.6e-20 100.5 100 53.0
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 9.9e-20 100.1 96 59.4
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.7e-19 99.4 99 55.6
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.7e-19 99.4 99 55.6
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 2.2e-19 99.0 100 51.0
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 4.9e-19 97.8 100 50.0
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 2.4e-18 95.5 75 62.7
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 2.4e-18 95.5 99 50.5
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 1.2e-17 93.2 99 49.5
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.6e-17 92.8 97 50.5
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 6.0e-17 90.9 102 45.1
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 1.0e-16 90.1 100 42.0
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 4.3e-15 84.7 102 44.1
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 9.6e-15 83.6 100 41.0
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 4.8e-14 81.3 100 46.0
FAN22G1715 Fragaria x ananassa HOM05D003602 ORTHO05D020334 6.2e-14 80.9 93 47.3
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 8.1e-14 80.5 98 45.9
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 1.8e-13 79.3 103 40.8
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 4.0e-13 78.2 99 43.4
Lsat_1_v5_gn_2_118360 Lactuca sativa HOM05D003602 ORTHO05D020334 2.0e-12 75.9 101 43.6
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 7.1e-10 67.4 68 50.0
AagrBONN_evm.TU.Sc2ySwM_368.663 Anthoceros agrestis HOM05D003602 ORTHO05D004808 2.1e-09 65.9 72 43.1
CARHR124510 Cardamine hirsuta HOM05D003602 ORTHO05D020334 3.3e-07 58.5 68 47.1


User provided reference genes

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