Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 1.9e-104 382.5 194 100.0
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 4.1e-94 348.2 193 91.7
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 8.2e-87 323.9 193 83.9
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 9.1e-86 320.5 193 84.5
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 6.5e-84 314.3 193 80.3
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 1.9e-83 312.8 193 80.3
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.5e-83 312.4 193 80.3
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 2.5e-83 312.4 193 79.8
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 2.5e-83 312.4 193 79.8
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 7.2e-83 310.8 193 80.8
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 6.1e-82 307.8 193 78.2
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.0e-81 307.0 193 78.8
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.8e-81 306.2 193 77.7
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.8e-81 306.2 193 80.3
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 2.3e-81 305.8 193 79.3
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 3.0e-81 305.4 193 78.8
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 3.9e-81 305.1 193 78.2
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.1e-80 303.5 193 78.8
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 2.0e-80 302.8 193 77.7
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.6e-80 302.4 193 77.7
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 2.6e-80 302.4 193 76.7
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 7.4e-80 300.8 193 76.2
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 7.4e-80 300.8 193 76.7
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 4.8e-79 298.1 193 76.2
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 5.3e-78 294.7 193 74.6
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 5.3e-78 294.7 187 79.1
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 1.3e-76 290.0 193 75.1
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 1.7e-76 289.7 196 76.5
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 1.7e-76 289.7 193 74.6
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 2.9e-76 288.9 193 75.6
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 8.5e-76 287.3 193 74.1
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 1.1e-75 287.0 193 73.6
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 1.1e-75 287.0 193 73.6
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 4.2e-75 285.0 193 72.5
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 9.4e-75 283.9 193 72.0
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 2.1e-74 282.7 193 73.6
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.7e-74 282.3 193 72.0
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 6.1e-74 281.2 193 71.5
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 8.0e-74 280.8 193 72.5
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.0e-73 280.4 193 72.0
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.0e-73 280.4 193 72.0
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 1.0e-73 280.4 193 72.5
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.0e-73 280.4 192 72.4
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.0e-73 280.4 192 72.4
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 1.0e-73 280.4 192 72.4
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 3.0e-73 278.9 192 71.4
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 3.0e-73 278.9 193 72.0
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 4.0e-73 278.5 193 72.5
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 4.0e-73 278.5 193 74.6
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 5.2e-73 278.1 193 72.0
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 6.7e-73 277.7 193 70.5
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 6.7e-73 277.7 193 72.0
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 8.8e-73 277.3 193 71.5
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 1.1e-72 276.9 193 72.5
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 1.1e-72 276.9 193 70.5
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 1.1e-72 276.9 193 70.5
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.5e-72 276.6 193 72.0
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 2.0e-72 276.2 194 71.1
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.6e-72 275.8 194 72.2
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 3.3e-72 275.4 193 71.5
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 4.4e-72 275.0 193 72.0
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 4.4e-72 275.0 193 71.0
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 4.4e-72 275.0 193 71.0
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 5.7e-72 274.6 193 71.5
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 5.7e-72 274.6 193 70.5
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 5.7e-72 274.6 193 72.0
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 7.5e-72 274.2 193 69.9
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 9.7e-72 273.9 194 71.1
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 9.7e-72 273.9 193 72.5
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 2.2e-71 272.7 193 71.5
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 3.7e-71 271.9 193 71.0
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-71 271.9 193 69.4
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 4.8e-71 271.6 193 71.0
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 4.8e-71 271.6 193 68.9
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 4.8e-71 271.6 193 69.4
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.8e-71 271.6 192 69.8
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.8e-71 271.6 193 69.4
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 6.3e-71 271.2 193 71.5
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 8.2e-71 270.8 193 68.4
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.4e-70 270.0 193 68.9
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.8e-70 269.6 193 68.9
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 2.4e-70 269.2 193 71.0
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.1e-70 268.9 193 68.4
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 3.1e-70 268.9 193 71.0
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.1e-70 268.9 193 69.4
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 3.1e-70 268.9 193 67.9
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 3.1e-70 268.9 193 67.9
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 4.1e-70 268.5 193 71.0
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 4.1e-70 268.5 193 69.9
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 9.1e-70 267.3 193 71.0
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 5.9e-69 264.6 193 68.4
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.3e-68 263.5 193 65.3
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 1.3e-68 263.5 193 66.8
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 2.2e-68 262.7 193 68.9
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 3.8e-68 261.9 193 67.4
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 8.5e-68 260.8 193 69.9
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.5e-67 260.0 193 69.9
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 1.9e-67 259.6 193 64.8
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 3.2e-67 258.8 193 68.4
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 7.2e-67 257.7 193 69.4
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 9.4e-67 257.3 193 63.2
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 9.4e-67 257.3 192 64.6
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 2.7e-66 255.8 193 67.9
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.8e-65 253.1 193 69.9
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.8e-65 253.1 193 63.7
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 5.2e-65 251.5 193 65.3
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 1.5e-64 250.0 193 64.8
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 2.0e-64 249.6 194 67.5
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 2.8e-63 245.7 193 61.7
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 6.3e-63 244.6 189 61.9
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.4e-62 243.4 193 60.1
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.7e-61 239.2 193 63.2
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 2.7e-61 239.2 192 60.9
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 3.5e-61 238.8 193 64.8
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 1.1e-59 233.8 193 64.8
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 9.4e-59 230.7 193 59.1
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 1.6e-58 229.9 187 64.7
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 2.1e-58 229.6 182 65.9
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 6.8e-57 224.6 180 61.1
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 6.8e-57 224.6 170 68.8
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 5.7e-56 221.5 193 61.7
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 6.3e-55 218.0 193 58.5
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 6.3e-55 218.0 193 58.5
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 6.3e-55 218.0 194 58.8
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.1e-54 217.2 204 53.4
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 7.0e-54 214.5 198 58.6
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 3.8e-52 208.8 193 56.0
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 2.5e-51 206.1 192 55.2
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 5.6e-51 204.9 139 72.7
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 5.2e-49 198.4 192 52.6
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.0e-48 196.4 192 52.1
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 3.4e-48 195.7 192 52.6
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 3.7e-47 192.2 201 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 6.4e-47 191.4 192 53.1
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 6.4e-47 191.4 196 57.1
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 1.1e-46 190.7 201 50.2
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 2.4e-46 189.5 183 55.7
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 2.4e-46 189.5 201 49.8
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 2.0e-45 186.4 129 68.2
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 8.0e-42 174.5 192 50.0
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 2.6e-40 169.5 182 54.9
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 5.4e-38 161.8 208 42.8
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 7.0e-38 161.4 197 50.8
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 1.2e-37 160.6 194 43.3
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.3e-36 157.1 193 46.6
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.3e-36 156.4 192 47.9
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.5e-32 143.7 203 39.9
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 3.4e-32 142.5 193 44.0
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 6.6e-28 128.3 93 65.6
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 3.6e-26 122.5 90 65.6
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 1.2e-21 107.5 73 74.0
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 2.7e-21 106.3 184 38.6
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 6.0e-21 105.1 121 49.6
AagrBONN_evm.TU.Sc2ySwM_368.663 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.0e-20 104.4 110 51.8
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 1.3e-20 104.0 211 32.2
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 2.5e-19 99.8 80 68.8
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 2.0e-16 90.1 190 30.0
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 3.2e-14 82.8 59 71.2
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 8.7e-12 74.7 127 37.0
Oeu004956.1 Olea europaea HOM05D003602 ORTHO05D004808 4.3e-11 72.4 81 55.6
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 5.6e-11 72.0 57 63.2
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 1.6e-10 70.5 57 61.4
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 5.3e-09 65.5 50 66.0
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 1.9e-06 57.0 34 79.4


User provided reference genes

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