Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.6e-103 378.6 182 100.0
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 9.1e-72 273.9 177 72.9
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.1e-69 266.9 179 70.9
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 5.2e-67 258.1 170 68.8
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.2e-66 256.9 187 64.2
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 4.4e-66 255.0 169 69.2
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.2e-65 252.7 167 69.5
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 8.3e-65 250.8 171 67.8
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 1.8e-64 249.6 171 65.5
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 4.1e-64 248.4 168 67.9
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 5.4e-64 248.1 169 64.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 7.0e-64 247.7 185 63.2
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.5e-63 245.4 170 67.1
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 4.5e-63 245.0 174 66.1
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 5.9e-63 244.6 179 65.4
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 1.3e-62 243.4 174 62.6
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.7e-62 243.0 169 65.7
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 1.7e-62 243.0 170 65.3
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 2.3e-62 242.7 169 66.3
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.0e-62 241.5 174 62.6
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.1e-61 240.4 177 61.0
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.1e-61 240.4 170 64.1
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.5e-61 240.0 171 63.2
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.5e-61 240.0 177 62.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 1.9e-61 239.6 162 66.0
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.5e-61 239.2 181 59.7
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 4.3e-61 238.4 183 60.7
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 5.6e-61 238.0 175 60.6
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 9.5e-61 237.3 166 63.9
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.2e-60 236.9 180 60.6
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.2e-60 236.9 165 66.7
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.2e-60 236.9 165 66.1
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 2.1e-60 236.1 173 63.0
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.8e-60 235.7 170 63.5
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 3.6e-60 235.3 172 61.6
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 4.7e-60 235.0 175 64.0
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 6.1e-60 234.6 165 66.1
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 8.0e-60 234.2 174 63.8
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.0e-59 233.8 170 58.8
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.0e-59 233.8 165 66.1
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.4e-59 233.4 160 68.1
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.8e-59 233.0 167 62.3
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 2.3e-59 232.6 170 60.0
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 3.0e-59 232.3 169 61.5
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 3.0e-59 232.3 170 60.6
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 4.0e-59 231.9 176 63.6
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.2e-59 231.5 180 57.8
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 8.9e-59 230.7 172 58.7
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.2e-58 230.3 174 62.6
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.2e-58 230.3 170 62.9
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.5e-58 229.9 160 66.9
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 2.0e-58 229.6 172 61.6
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 2.0e-58 229.6 167 63.5
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 3.4e-58 228.8 169 59.2
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 4.4e-58 228.4 186 55.4
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 4.4e-58 228.4 186 55.4
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.7e-57 226.5 171 60.2
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.7e-57 226.5 175 57.1
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 2.9e-57 225.7 171 60.2
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 4.9e-57 224.9 170 58.8
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 4.9e-57 224.9 168 61.9
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 4.9e-57 224.9 177 56.5
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 8.3e-57 224.2 171 58.5
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 2.4e-56 222.6 162 58.6
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.4e-56 222.6 170 58.2
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 3.2e-56 222.2 162 59.3
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 3.2e-56 222.2 167 61.7
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 5.4e-56 221.5 181 52.5
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 9.2e-56 220.7 171 57.3
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.6e-55 219.9 164 57.9
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.5e-55 218.8 174 54.6
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.3e-54 216.9 162 58.0
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.9e-53 213.0 150 64.7
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 5.6e-53 211.5 171 55.0
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 7.3e-53 211.1 170 53.5
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.2e-52 210.3 170 53.5
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.2e-52 210.3 170 53.5
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.1e-52 209.5 171 56.1
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 6.2e-52 208.0 165 56.4
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 5.2e-51 204.9 170 52.9
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 5.2e-51 204.9 170 52.9
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 5.2e-51 204.9 175 52.0
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 5.2e-51 204.9 167 57.5
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 6.8e-51 204.5 167 57.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.2e-50 203.8 150 61.3
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 3.4e-50 202.2 163 58.9
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 3.4e-50 202.2 170 52.4
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 3.4e-50 202.2 162 57.4
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 7.3e-45 184.5 158 55.7
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.8e-43 179.9 169 50.9
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-40 170.6 137 56.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 2.3e-38 162.9 171 46.8
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.4e-35 153.7 110 63.6
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 2.0e-34 149.8 132 58.3
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 7.6e-34 147.9 110 62.7
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 5.4e-32 141.7 116 59.5
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 3.5e-31 139.0 110 53.6
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 5.6e-29 131.7 162 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.8e-27 126.7 147 41.5
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 1.3e-25 120.6 118 46.6
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 1.1e-21 107.5 174 35.1
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.9e-21 106.7 157 34.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.3e-20 104.0 148 35.1
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.6e-20 103.6 171 31.0
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 3.6e-20 102.4 161 35.4
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 8.1e-20 101.3 76 55.3
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 9.0e-19 97.8 76 55.3
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 9.0e-19 97.8 142 32.4
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.2e-18 97.4 165 30.9
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 1.5e-18 97.1 179 29.1
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.0e-18 96.7 165 30.9
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 4.5e-18 95.5 149 32.9
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 7.6e-18 94.7 153 33.3
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.9e-17 92.8 60 66.7
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 2.9e-17 92.8 137 35.8
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.8e-17 92.4 158 31.6
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 3.8e-17 92.4 142 33.8
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 8.4e-17 91.3 167 30.5
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 8.4e-17 91.3 136 30.9
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.1e-16 90.9 158 31.6
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.4e-16 90.5 147 32.0
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 5.4e-16 88.6 142 33.1
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 5.4e-16 88.6 146 34.2
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 7.1e-16 88.2 137 31.4
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 9.3e-16 87.8 158 31.0
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 9.3e-16 87.8 176 30.1
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 1.2e-15 87.4 158 32.3
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 2.7e-15 86.3 162 28.4
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 3.5e-15 85.9 156 26.9
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 3.5e-15 85.9 135 32.6
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 6.0e-15 85.1 156 26.9
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 7.9e-15 84.7 157 30.6
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.0e-14 84.3 84 46.4
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 1.8e-14 83.6 135 32.6
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 1.8e-14 83.6 135 34.1
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 2.3e-14 83.2 84 45.2
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 3.0e-14 82.8 156 28.2
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 5.1e-14 82.0 163 29.4
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 5.1e-14 82.0 157 28.7
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 6.7e-14 81.6 136 30.9
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 8.7e-14 81.3 135 29.6
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.1e-13 80.9 165 29.1
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 3.3e-13 79.3 135 28.9
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 5.6e-13 78.6 146 30.1
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 7.4e-13 78.2 135 31.9
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 2.1e-12 76.6 148 30.4
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 3.6e-12 75.9 55 52.7
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 6.2e-12 75.1 147 29.3
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.1e-11 74.3 156 25.6
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.1e-11 74.3 135 28.9
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 4.0e-11 72.4 136 27.9
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 9.0e-11 71.2 117 30.8
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 1.5e-10 70.5 87 41.4
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.3e-09 67.4 37 81.1
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 2.9e-09 66.2 167 24.6
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 6.4e-09 65.1 85 32.9
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.4e-08 63.9 135 27.4
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.2e-08 62.8 135 27.4
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 4.2e-08 62.4 56 48.2
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.6e-07 58.9 44 54.5


User provided reference genes

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