Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 2.8e-258 894.8 467 100.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 2.2e-170 602.8 491 68.0
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 8.7e-167 590.9 519 63.4
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.8e-165 585.9 518 63.1
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 9.0e-164 580.9 488 65.6
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 3.4e-163 578.9 493 64.1
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 1.6e-160 570.1 485 64.1
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.7e-159 566.6 492 63.4
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 3.0e-159 565.8 491 64.4
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 3.0e-159 565.8 485 63.7
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 6.6e-159 564.7 490 63.1
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 6.6e-159 564.7 509 61.7
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 3.3e-158 562.4 488 63.3
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 3.3e-158 562.4 488 63.3
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.3e-157 560.5 487 63.0
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 3.1e-156 555.8 505 61.0
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 9.9e-155 550.8 491 63.3
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.3e-154 550.4 493 64.1
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 1.7e-154 550.1 487 62.8
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 3.8e-154 548.9 482 63.1
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 3.2e-153 545.8 484 61.2
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.4e-153 545.0 486 64.2
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 1.6e-152 543.5 487 62.6
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.6e-152 543.5 486 63.6
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 2.1e-152 543.1 488 62.5
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 2.7e-152 542.7 487 62.2
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 4.6e-152 542.0 490 61.4
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.3e-151 540.4 486 63.2
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 3.0e-151 539.3 484 60.5
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 5.1e-151 538.5 481 63.0
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 6.7e-151 538.1 524 58.6
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 9.6e-150 534.3 488 60.2
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 9.6e-150 534.3 489 61.3
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.8e-149 532.7 465 63.4
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 3.7e-149 532.3 484 60.3
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 4.8e-149 531.9 488 61.7
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 8.1e-149 531.2 490 62.4
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.1e-148 530.8 490 60.0
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 1.2e-147 527.3 487 60.8
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 2.0e-147 526.6 484 60.7
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 2.6e-147 526.2 483 59.4
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 3.4e-147 525.8 497 60.0
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 3.4e-147 525.8 486 60.1
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.0e-146 524.2 488 59.4
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.0e-146 524.2 506 57.9
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 1.7e-146 523.5 493 60.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 2.9e-146 522.7 483 62.3
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 4.9e-146 521.9 487 61.4
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 4.2e-145 518.8 440 63.4
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 2.7e-144 516.2 488 60.0
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 7.9e-144 514.6 488 60.9
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.3e-143 513.8 487 59.3
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.8e-143 513.5 479 61.0
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 2.3e-143 513.1 484 58.7
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 3.9e-143 512.3 479 59.9
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.5e-142 509.6 484 59.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 4.3e-142 508.8 484 58.5
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.6e-141 506.9 483 56.7
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.1e-140 504.2 482 57.5
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 2.4e-140 503.1 435 63.4
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.5e-139 500.4 483 55.7
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 7.6e-139 498.0 487 58.9
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 1.0e-138 497.7 445 61.6
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 1.7e-138 496.9 483 56.5
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 3.8e-138 495.7 483 55.7
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 8.4e-138 494.6 485 57.9
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 8.4e-138 494.6 483 56.3
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 1.4e-137 493.8 483 55.9
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 1.9e-137 493.4 485 57.9
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 5.5e-137 491.9 337 77.7
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 7.1e-137 491.5 483 56.1
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.1e-136 490.0 491 56.8
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 1.8e-135 486.9 499 54.5
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.8e-135 486.9 453 61.8
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 5.1e-135 485.3 487 56.3
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 7.4e-134 481.5 481 57.4
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 3.7e-133 479.2 490 56.1
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 3.1e-132 476.1 437 61.6
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 9.0e-132 474.6 504 54.0
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 9.0e-132 474.6 491 55.2
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.5e-131 473.8 482 54.4
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 2.0e-131 473.4 482 53.9
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 5.0e-130 468.8 482 56.4
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 4.6e-128 462.2 487 52.6
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 6.1e-128 461.8 485 54.0
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 2.5e-126 456.4 495 52.1
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 4.3e-126 455.7 487 55.0
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 5.9e-123 445.3 493 53.8
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.0e-122 444.5 387 65.1
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 1.6e-120 437.2 410 61.5
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.9e-113 413.7 507 48.7
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 5.5e-113 412.1 389 58.6
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.3e-110 402.9 325 70.2
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 5.7e-110 402.1 488 46.7
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.7e-109 399.4 488 46.9
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 7.0e-108 395.2 331 62.8
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 2.7e-104 383.3 341 61.9
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.8e-103 380.6 340 64.1
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 8.8e-103 378.3 482 46.9
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 2.4e-100 370.2 494 44.7
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.7e-96 356.7 331 61.6
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 8.8e-95 351.7 532 43.2
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 2.5e-89 333.6 306 62.4
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.5e-86 324.3 349 53.6
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 2.0e-83 313.9 378 48.4
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 6.2e-72 275.8 286 55.6
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 1.6e-64 251.1 233 58.8
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 6.2e-64 249.2 507 34.5
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.4e-60 238.0 453 37.1
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 8.4e-53 212.2 361 42.4
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 2.1e-48 197.6 517 31.7
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 5.5e-36 156.4 198 49.5
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.8e-34 151.4 174 51.1
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 5.8e-30 136.3 512 27.7
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.3e-29 135.2 397 34.0
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.5e-28 131.0 199 46.7
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.3e-21 108.6 80 66.2
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 5.0e-21 106.7 80 66.2
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 5.0e-21 106.7 81 67.9
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 5.0e-21 106.7 81 65.4
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 8.7e-18 95.9 430 26.3
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 5.7e-17 93.2 422 23.0
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 9.7e-17 92.4 85 54.1
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 4.8e-16 90.1 141 40.4
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 8.2e-16 89.4 526 22.1
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 6.7e-10 69.7 72 50.0
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 2.0e-09 68.2 72 48.6
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 4.3e-09 67.0 100 42.0


User provided reference genes

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