Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.7e-219 765.0 378 100.0
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.6e-203 712.6 371 94.1
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.5e-182 641.7 371 81.9
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.2e-181 639.0 371 81.4
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.2e-180 634.0 371 81.1
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.1e-179 632.5 369 80.5
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 3.6e-179 631.7 369 80.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 4.7e-179 631.3 369 81.0
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.0e-178 628.6 367 79.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.0e-178 628.6 368 79.6
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 5.2e-178 627.9 370 80.3
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 5.2e-178 627.9 371 79.8
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.5e-177 626.3 369 80.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.5e-177 626.3 369 79.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 2.6e-177 625.5 370 80.0
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-177 624.8 368 80.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 5.7e-177 624.4 369 80.2
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.5e-177 624.0 376 79.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-176 622.9 368 79.9
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.8e-176 622.1 368 80.4
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.8e-176 621.3 369 78.6
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 8.3e-176 620.5 368 79.6
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.3e-176 620.5 371 78.7
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-175 619.8 369 79.9
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.4e-175 619.8 369 80.2
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.8e-175 619.4 371 79.5
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.8e-175 619.4 368 79.1
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-175 618.6 368 81.0
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 4.1e-175 618.2 370 79.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.1e-175 618.2 368 78.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 7.0e-175 617.5 368 81.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 7.0e-175 617.5 368 79.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.0e-175 617.5 386 76.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 9.1e-175 617.1 370 78.4
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 9.1e-175 617.1 366 79.0
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.2e-174 616.7 369 79.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-174 616.7 368 79.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.2e-174 616.7 367 79.3
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-174 616.7 368 79.3
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-174 616.7 371 79.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.7e-174 615.5 368 78.8
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.5e-174 615.1 371 78.4
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 4.5e-174 614.8 366 78.4
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 4.5e-174 614.8 409 73.1
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 5.9e-174 614.4 369 79.4
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 5.9e-174 614.4 391 75.7
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.9e-174 614.4 368 78.8
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.7e-174 614.0 368 78.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 7.7e-174 614.0 371 79.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 7.7e-174 614.0 370 78.9
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.0e-173 613.6 371 79.5
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.7e-173 612.8 371 77.4
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.2e-173 612.5 368 79.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.9e-173 612.1 366 79.0
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.9e-173 612.1 368 79.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.8e-173 611.7 371 78.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 5.0e-173 611.3 369 78.6
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.0e-173 611.3 383 77.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 6.5e-173 610.9 371 79.0
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-172 610.1 370 77.8
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.1e-172 610.1 370 77.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.2e-172 608.6 370 77.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 7.2e-172 607.4 368 77.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 9.4e-172 607.1 368 77.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 9.4e-172 607.1 370 76.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 9.4e-172 607.1 371 78.7
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.2e-171 606.7 368 77.2
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.2e-171 606.7 370 77.6
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.7e-171 605.5 369 77.0
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.6e-171 605.1 369 75.9
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.6e-171 605.1 368 78.0
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 6.1e-171 604.4 368 77.4
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.0e-171 604.0 368 77.2
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.8e-170 602.8 392 74.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-170 602.4 371 78.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.0e-170 602.1 369 75.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 5.2e-170 601.3 366 78.1
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 8.8e-170 600.5 367 76.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.8e-170 600.5 387 76.2
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.8e-170 600.5 369 75.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.5e-169 599.7 369 76.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.5e-169 599.7 370 76.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.0e-169 599.4 371 75.7
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-169 599.4 387 75.7
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.0e-169 599.4 387 74.7
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.4e-169 598.6 368 76.6
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 5.7e-169 597.8 369 77.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 7.5e-169 597.4 371 75.7
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.8e-169 597.0 387 75.7
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.3e-168 596.7 361 78.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.7e-168 595.1 369 75.1
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 4.9e-168 594.7 401 71.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.3e-168 594.3 368 76.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 4.1e-167 591.7 370 77.0
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 4.1e-167 591.7 368 75.5
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 2.7e-166 589.0 450 65.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 3.5e-166 588.6 367 74.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.9e-165 585.5 369 74.3
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.5e-164 582.4 364 75.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.6e-164 581.3 368 74.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 5.6e-164 581.3 364 74.7
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.7e-163 578.2 368 73.4
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.7e-163 578.2 368 73.4
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.1e-163 577.8 369 72.6
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 8.0e-163 577.4 368 73.9
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.4e-162 576.6 368 73.1
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.3e-162 575.9 341 78.6
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 3.0e-162 575.5 368 73.9
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.0e-162 575.1 368 73.1
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 8.9e-162 573.9 375 73.3
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.2e-161 573.5 368 72.8
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.2e-161 573.5 369 73.2
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.5e-161 573.2 368 73.1
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.5e-161 573.2 368 76.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.4e-161 571.6 368 72.6
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.7e-160 569.7 368 73.4
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.7e-160 569.7 361 74.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.4e-160 567.8 370 73.5
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-159 567.0 369 74.3
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.1e-159 567.0 368 73.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.8e-159 566.2 368 72.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.2e-159 565.5 367 73.3
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.2e-159 565.5 341 78.6
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.2e-159 565.5 368 70.7
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 6.6e-157 557.8 369 73.4
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.6e-157 557.4 367 70.3
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.1e-156 557.0 369 74.3
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.6e-155 553.1 367 68.9
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.6e-155 552.0 367 69.8
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.0e-155 550.8 368 69.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.1e-154 548.9 368 70.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 5.2e-154 548.1 369 69.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.8e-154 547.7 367 70.8
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 4.0e-146 521.9 315 78.1
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.7e-142 509.2 318 75.5
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.6e-139 500.0 370 63.2
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.1e-135 487.3 367 61.9
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.6e-134 483.4 368 64.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-132 477.2 386 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.9e-132 476.5 367 61.9
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.8e-131 472.6 367 60.5
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.4e-129 465.7 342 65.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.5e-124 450.3 302 73.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-120 436.8 314 68.5
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 4.6e-118 428.7 382 55.2
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.5e-108 396.4 254 73.6
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-103 380.9 223 78.5
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-102 376.3 235 75.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-95 354.0 198 83.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.3e-95 351.3 198 82.8
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-94 350.9 233 70.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 6.1e-94 348.6 371 48.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 9.7e-92 341.3 455 40.2
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.6e-86 323.9 351 46.7
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.1e-84 317.8 376 43.9
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 3.7e-83 312.8 221 70.6
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 5.2e-77 292.4 191 71.2
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 3.2e-71 273.1 226 61.9
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 8.0e-70 268.5 174 73.6
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.3e-68 263.1 258 55.0
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.3e-64 251.1 155 75.5
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.3e-61 240.4 178 66.9
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.5e-57 226.1 167 65.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 2.5e-55 220.3 128 81.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 3.6e-54 216.5 229 51.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.6e-52 210.3 124 78.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.3e-51 205.7 121 76.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-46 191.4 337 36.8
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.8e-45 187.6 127 72.4
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.9e-43 179.5 118 71.2
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-42 177.9 343 35.9
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.6e-38 163.3 122 63.1
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.7e-32 144.4 140 54.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.5e-31 140.6 88 78.4
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.9e-27 126.3 126 53.2
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.1e-25 120.9 71 78.9
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 9.5e-23 112.1 82 64.6
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.4e-18 96.3 98 46.9
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.6e-17 94.7 87 51.7
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.3e-11 75.1 52 65.4
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 3.3e-07 60.5 303 22.1


User provided reference genes

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