Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 3.7e-112 408.3 219 100.0
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.9e-96 354.8 213 85.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.2e-95 350.5 209 86.1
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.7e-94 349.0 212 86.3
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.7e-94 349.0 212 86.3
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.5e-94 348.6 209 87.1
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.5e-94 348.6 209 87.1
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 4.6e-94 348.2 217 84.8
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.0e-93 345.5 218 83.5
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 3.0e-93 345.5 208 86.5
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 5.1e-93 344.7 209 84.7
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 8.6e-93 344.0 209 86.1
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 8.6e-93 344.0 213 83.6
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.1e-92 343.6 208 85.6
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.1e-92 343.6 208 85.6
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.5e-92 343.2 208 85.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 1.5e-92 343.2 208 85.6
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.9e-92 342.8 207 86.0
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.9e-92 342.8 208 83.7
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 5.6e-92 341.3 216 81.9
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 7.3e-92 340.9 219 80.8
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 9.6e-92 340.5 208 86.1
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 9.6e-92 340.5 208 85.1
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.1e-91 339.3 208 85.1
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 2.1e-91 339.3 205 87.3
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 2.8e-91 339.0 207 84.5
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.8e-91 339.0 211 82.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.8e-91 339.0 208 84.6
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.8e-91 339.0 208 84.6
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 4.7e-91 338.2 208 84.6
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.7e-91 338.2 209 84.2
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 6.2e-91 337.8 214 82.2
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 8.1e-91 337.4 209 85.6
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-90 337.0 205 84.9
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.1e-90 337.0 203 86.2
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.1e-90 337.0 205 83.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.4e-90 336.7 203 87.2
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.4e-90 336.7 208 83.7
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.8e-90 336.3 211 82.5
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.4e-90 335.9 208 84.1
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.1e-90 335.5 207 85.5
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 3.1e-90 335.5 209 84.2
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 4.0e-90 335.1 201 87.1
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 6.8e-90 334.3 218 81.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 8.9e-90 334.0 207 81.6
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.2e-89 333.6 209 83.7
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 1.2e-89 333.6 211 82.9
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.2e-89 333.6 203 86.2
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.0e-89 332.8 218 81.2
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.6e-89 332.4 208 81.2
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.6e-89 332.4 214 81.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 3.4e-89 332.0 208 80.8
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 7.6e-89 330.9 217 80.2
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 7.6e-89 330.9 210 84.3
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 7.6e-89 330.9 207 82.1
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 7.6e-89 330.9 205 84.4
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 7.6e-89 330.9 207 83.1
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 7.6e-89 330.9 218 79.8
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 7.6e-89 330.9 208 81.7
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.9e-89 330.5 206 82.0
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 9.9e-89 330.5 205 84.4
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 9.9e-89 330.5 217 79.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.3e-88 330.1 219 80.8
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.3e-88 330.1 207 83.1
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.2e-88 329.3 207 83.1
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 2.2e-88 329.3 217 79.7
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.9e-88 328.9 213 79.8
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.4e-88 327.8 208 82.7
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.1e-87 327.0 207 84.1
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.4e-87 326.6 220 78.6
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.9e-87 326.2 205 82.9
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.9e-87 326.2 208 81.2
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.4e-87 325.9 203 84.2
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 2.4e-87 325.9 208 82.2
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 3.2e-87 325.5 209 81.8
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 5.4e-87 324.7 209 81.8
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 9.3e-87 323.9 203 83.3
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.2e-86 323.6 195 84.1
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.7e-86 322.4 201 84.1
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.7e-86 322.4 209 81.3
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 4.6e-86 321.6 209 81.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.0e-85 320.5 209 80.9
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.7e-85 319.7 213 77.9
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 2.3e-85 319.3 207 79.2
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.3e-85 319.3 209 80.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 3.0e-85 318.9 214 78.5
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 8.7e-85 317.4 217 76.0
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.7e-85 317.4 214 77.6
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.1e-84 317.0 217 78.8
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.5e-84 316.6 208 79.8
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.9e-84 316.2 214 77.1
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 2.5e-84 315.8 211 79.1
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 2.5e-84 315.8 211 79.1
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.5e-84 315.8 214 78.0
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.5e-84 315.8 214 78.0
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 3.3e-84 315.5 208 79.8
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.3e-84 315.5 208 79.8
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 4.3e-84 315.1 209 81.3
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 9.6e-84 313.9 213 77.9
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 9.6e-84 313.9 208 79.3
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 9.6e-84 313.9 205 80.0
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-83 313.5 207 80.7
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.8e-83 312.4 213 77.5
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 2.8e-83 312.4 214 78.5
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 2.8e-83 312.4 214 78.5
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 2.8e-83 312.4 205 79.5
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 2.8e-83 312.4 206 80.1
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.8e-83 312.4 192 84.4
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 3.6e-83 312.0 213 78.4
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 4.8e-83 311.6 207 80.2
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 4.8e-83 311.6 207 80.7
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 6.2e-83 311.2 223 74.9
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.1e-82 310.5 213 77.0
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.1e-82 310.5 209 76.6
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.4e-82 309.3 226 73.9
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 4.0e-82 308.5 205 79.0
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 6.9e-82 307.8 207 80.2
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 4.5e-81 305.1 270 64.8
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 9.9e-81 303.9 280 62.1
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.2e-80 302.8 203 78.3
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 6.4e-80 301.2 216 72.7
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.6e-78 296.6 193 81.3
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 2.7e-78 295.8 183 82.0
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.5e-76 289.3 216 68.1
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 5.6e-76 288.1 207 72.5
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 9.6e-76 287.3 194 75.3
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 2.8e-75 285.8 170 84.7
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.6e-75 285.4 289 58.8
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 3.6e-75 285.4 183 79.2
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.1e-74 282.3 198 74.7
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 5.8e-73 278.1 196 73.0
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.2e-72 276.2 210 70.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 3.8e-72 275.4 199 72.9
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 6.4e-72 274.6 271 60.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.2e-70 270.4 199 74.4
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 6.0e-70 268.1 192 72.4
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.8e-69 266.5 213 66.2
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.9e-68 263.1 181 73.5
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 2.5e-68 262.7 172 77.9
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 2.5e-68 262.7 197 71.1
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.3e-68 262.3 202 66.3
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.1e-67 259.6 169 81.1
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 2.0e-65 253.1 212 63.7
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 6.5e-64 248.1 192 69.8
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 3.4e-57 225.7 181 64.1
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 2.7e-54 216.1 213 59.6
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.5e-49 200.3 194 60.8
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.2e-48 196.4 123 79.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.9e-47 193.4 186 57.0
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.1e-39 167.5 107 86.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 3.3e-36 156.0 199 47.2
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.6e-33 147.1 200 44.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 2.0e-33 146.7 89 77.5
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.2e-32 143.3 112 65.2
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 7.5e-28 128.3 186 40.9
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.8e-26 123.6 215 39.5
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.0e-25 120.2 82 73.2
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.9e-24 116.3 78 80.8
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 2.3e-21 106.7 98 57.1
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 3.0e-21 106.3 63 82.5
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 8.8e-21 104.8 63 81.0
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 2.8e-14 83.2 167 37.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.3e-11 74.3 42 85.7


User provided reference genes

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