Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 4.9e-85 317.8 162 100.0
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 8.2e-40 167.5 181 54.7
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 3.2e-36 155.6 190 52.1
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 7.2e-36 154.5 190 51.6
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 4.7e-35 151.8 199 50.3
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.7e-33 144.8 201 46.3
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.3e-29 133.7 178 50.0
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 8.5e-29 131.0 170 51.2
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 1.1e-28 130.6 193 49.2
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 1.9e-28 129.8 171 49.7
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 4.2e-28 128.6 212 42.0
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 2.7e-27 125.9 200 43.5
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 1.0e-26 124.0 180 46.7
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 1.3e-24 117.1 229 40.2
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 8.2e-24 114.4 179 43.6
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.5e-22 109.0 166 45.2
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 3.5e-22 109.0 230 34.3
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 5.9e-22 108.2 213 38.5
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 5.9e-22 108.2 164 42.1
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 3.8e-21 105.5 198 39.9
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 3.8e-21 105.5 208 40.4
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 6.5e-21 104.8 207 40.1
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 4.2e-20 102.1 159 44.0
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 4.2e-20 102.1 219 36.5
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 7.2e-20 101.3 206 39.8
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 9.4e-20 100.9 208 39.9
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 9.4e-20 100.9 162 42.0
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 1.2e-19 100.5 188 39.9
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 1.6e-19 100.1 208 36.5
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.1e-19 99.8 219 35.6
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 3.6e-19 99.0 158 44.3
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 3.6e-19 99.0 227 37.9
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.4e-18 97.1 123 52.0
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 1.8e-18 96.7 189 38.6
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.8e-18 96.7 228 35.1
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 2.3e-18 96.3 183 39.3
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 5.2e-18 95.1 192 39.1
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 6.8e-18 94.7 158 39.9
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.2e-17 94.0 184 39.1
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.5e-17 93.6 171 38.6
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 4.4e-17 92.0 135 45.9
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 9.8e-17 90.9 200 36.5
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.3e-16 90.5 177 38.4
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 1.3e-16 90.5 203 36.5
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 1.7e-16 90.1 203 36.5
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 2.2e-16 89.7 168 38.7
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.8e-16 88.6 199 34.7
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 6.3e-16 88.2 222 34.2
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 8.3e-16 87.8 178 40.4
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.8e-15 86.7 200 35.0
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 5.4e-15 85.1 134 41.0
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 1.2e-14 84.0 168 39.3
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 4.5e-14 82.0 176 39.8
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 7.7e-14 81.3 160 37.5
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.3e-13 80.5 168 36.9
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.7e-13 80.1 209 37.3
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 5.0e-13 78.6 46 78.3
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 5.0e-13 78.6 193 32.1
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.9e-12 76.6 189 34.4
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.5e-12 76.3 206 33.0
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 4.2e-12 75.5 148 39.9
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.6e-11 73.6 62 56.5
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 2.7e-11 72.8 176 38.1
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 4.7e-11 72.0 60 61.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 2.3e-10 69.7 161 34.8
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 5.2e-10 68.6 149 36.9
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.5e-09 67.0 144 39.6
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 2.0e-09 66.6 122 35.2
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 2.0e-09 66.6 172 34.3
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.4e-09 65.9 189 34.9
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 4.4e-09 65.5 147 39.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.5e-09 64.7 32 75.0
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 7.5e-09 64.7 32 75.0
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 9.8e-09 64.3 191 32.5
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 6.3e-08 61.6 38 60.5
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 8.3e-08 61.2 60 51.7
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 8.3e-08 61.2 195 31.8
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.4e-07 60.5 36 69.4
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.4e-07 59.7 37 64.9
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 3.1e-07 59.3 37 62.2
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 4.1e-07 58.9 128 35.2
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.6e-06 57.0 199 34.2
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 1.6e-06 57.0 188 31.9
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 3.5e-06 55.8 36 55.6
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 3.5e-06 55.8 36 55.6
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 3.5e-06 55.8 36 55.6
CiPaw.05G243800 Carya illinoinensis HOM05D002710 ORTHO05D002905 4.5e-06 55.5 36 55.6
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 5.9e-06 55.1 181 34.3
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 7.7e-06 54.7 52 51.9
Duzib268G0186 Durio zibethinus HOM05D002710 ORTHO05D002905 7.7e-06 54.7 36 55.6


User provided reference genes

Program Settings