Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C299T2 Lonicera japonica HOM05D005763 ORTHO05D005970 1.5e-39 165.6 76 100.0
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 5.2e-29 130.6 63 88.9
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 8.9e-29 129.8 66 84.8
CANSAT54G0901 Cannabis sativa HOM05D005763 ORTHO05D005970 1.2e-28 129.4 70 81.4
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 2.6e-28 128.3 70 78.6
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 2.6e-28 128.3 70 81.4
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 3.4e-28 127.9 63 85.7
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 3.4e-28 127.9 71 80.3
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 4.4e-28 127.5 70 81.4
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 4.4e-28 127.5 63 87.3
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 4.4e-28 127.5 63 87.3
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 5.8e-28 127.1 63 85.7
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 5.8e-28 127.1 63 85.7
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 5.8e-28 127.1 63 85.7
CANSAT54G0676 Cannabis sativa HOM05D005763 ORTHO05D005970 7.5e-28 126.7 63 85.7
HanXRQChr11g0338791 Helianthus annuus HOM05D005763 ORTHO05D005970 7.5e-28 126.7 66 81.8
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 9.8e-28 126.3 66 83.3
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 1.3e-27 125.9 66 81.8
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 1.3e-27 125.9 66 83.3
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 1.3e-27 125.9 70 78.6
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 1.3e-27 125.9 70 80.0
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 1.7e-27 125.6 70 80.0
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 1.7e-27 125.6 70 80.0
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 1.7e-27 125.6 70 77.1
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 1.7e-27 125.6 70 80.0
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 1.7e-27 125.6 63 84.1
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 2.2e-27 125.2 63 84.1
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 2.2e-27 125.2 70 78.6
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 2.9e-27 124.8 70 77.1
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.9e-27 124.8 70 77.1
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 2.9e-27 124.8 63 84.1
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 2.9e-27 124.8 63 84.1
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 4.9e-27 124.0 70 77.1
Peaxi162Scf00011g00123 Petunia axillaris HOM05D005763 ORTHO05D005970 8.3e-27 123.2 63 81.0
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 1.1e-26 122.9 66 81.8
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 1.4e-26 122.5 70 77.1
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 1.4e-26 122.5 70 75.7
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 1.9e-26 122.1 59 88.1
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 1.9e-26 122.1 59 88.1
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 1.9e-26 122.1 66 81.8
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 1.9e-26 122.1 63 81.0
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.4e-26 121.7 79 70.9
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 3.2e-26 121.3 70 78.6
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 3.2e-26 121.3 70 74.3
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 3.2e-26 121.3 68 77.9
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 4.1e-26 120.9 63 79.4
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 4.1e-26 120.9 70 77.1
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 5.4e-26 120.6 70 75.7
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 7.0e-26 120.2 70 77.1
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 7.0e-26 120.2 71 74.6
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 7.0e-26 120.2 63 81.0
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 9.2e-26 119.8 71 73.2
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 9.2e-26 119.8 70 74.3
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 9.2e-26 119.8 66 80.3
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 1.2e-25 119.4 68 76.5
Carub.0002s0660 Capsella rubella HOM05D005763 ORTHO05D005970 1.6e-25 119.0 68 77.9
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 1.6e-25 119.0 70 77.1
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 1.6e-25 119.0 73 74.0
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 1.6e-25 119.0 70 74.3
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 2.0e-25 118.6 68 76.5
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 2.0e-25 118.6 70 75.7
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 2.0e-25 118.6 70 74.3
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 2.7e-25 118.2 66 78.8
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 3.5e-25 117.9 70 75.7
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 3.5e-25 117.9 70 75.7
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 3.5e-25 117.9 62 82.3
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 4.6e-25 117.5 63 84.1
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 4.6e-25 117.5 63 77.8
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 4.6e-25 117.5 63 79.4
AL2G18480 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 6.0e-25 117.1 68 76.5
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 6.0e-25 117.1 68 77.9
MD08G1241300 Malus domestica HOM05D005763 ORTHO05D005970 6.0e-25 117.1 63 77.8
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 7.8e-25 116.7 71 71.8
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 1.0e-24 116.3 74 75.7
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 1.0e-24 116.3 68 75.0
AT1G58025 Arabidopsis thaliana HOM05D005763 ORTHO05D005970 1.3e-24 115.9 68 75.0
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 1.3e-24 115.9 68 75.0
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 1.3e-24 115.9 68 75.0
PSO017G0231 Papaver somniferum HOM05D005763 ORTHO05D005970 1.3e-24 115.9 68 73.5
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 1.3e-24 115.9 68 73.5
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 1.3e-24 115.9 70 72.9
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 1.7e-24 115.5 66 74.2
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 1.7e-24 115.5 68 75.0
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 1.7e-24 115.5 68 75.0
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 1.7e-24 115.5 68 75.0
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 1.7e-24 115.5 68 75.0
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 1.7e-24 115.5 66 75.8
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 1.7e-24 115.5 68 76.5
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 2.3e-24 115.2 63 79.4
THA.LOC104820230 Tarenaya hassleriana HOM05D005763 ORTHO05D005970 2.3e-24 115.2 68 75.0
Lsat_1_v5_gn_9_120281 Lactuca sativa HOM05D005763 ORTHO05D005970 3.0e-24 114.8 72 72.2
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 5.0e-24 114.0 63 76.2
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 5.0e-24 114.0 74 68.9
Zm00001eb174170 Zea mays HOM05D005763 ORTHO05D005970 1.1e-23 112.8 63 77.8
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.5e-23 111.7 74 68.9
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 2.5e-23 111.7 68 73.5
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 2.5e-23 111.7 63 74.6
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 3.3e-23 111.3 66 75.8
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 3.3e-23 111.3 63 74.6
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 4.3e-23 110.9 66 74.2
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 5.6e-23 110.5 66 71.2
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.2e-22 109.4 63 76.2
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.2e-22 109.4 63 76.2
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 2.1e-22 108.6 64 71.9
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 2.1e-22 108.6 68 70.6
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 2.8e-22 108.2 74 67.6
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 2.8e-22 108.2 74 67.6
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 2.8e-22 108.2 72 66.7
COL.COLO4_29043 Corchorus olitorius HOM05D005763 ORTHO05D005970 3.6e-22 107.8 68 72.1
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 3.6e-22 107.8 66 72.7
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 4.7e-22 107.5 74 66.2
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 4.7e-22 107.5 66 72.7
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 6.2e-22 107.1 75 62.7
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 6.2e-22 107.1 66 66.7
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 8.1e-22 106.7 66 69.7
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 8.1e-22 106.7 68 70.6
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 8.1e-22 106.7 64 71.9
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 8.1e-22 106.7 64 71.9
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 8.1e-22 106.7 63 74.6
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.4e-21 105.9 64 71.9
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 1.8e-21 105.5 66 71.2
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 4.0e-21 104.4 66 68.2
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 5.2e-21 104.0 68 66.2
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 6.8e-21 103.6 63 68.3
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 1.2e-20 102.8 72 63.9
MD15G1435000 Malus domestica HOM05D005763 ORTHO05D005970 1.2e-20 102.8 75 60.0
MD15G1434900 Malus domestica HOM05D005763 ORTHO05D005970 3.4e-20 101.3 63 65.1
GSVIVG01023253001 Vitis vinifera HOM05D005763 ORTHO05D005970 1.7e-19 99.0 63 68.3
ECA240G1654 Erigeron canadensis HOM05D005763 ORTHO05D005970 2.9e-19 98.2 71 60.6
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 1.9e-18 95.5 54 77.8
SMO367G0653 Selaginella moellendorffii HOM05D005763 ORTHO05D005970 1.6e-17 92.4 63 63.5
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 6.0e-17 90.5 61 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3967 Anthoceros agrestis HOM05D005763 ORTHO05D005970 2.3e-16 88.6 63 58.7
Mapoly0005s0143 Marchantia polymorpha HOM05D005763 ORTHO05D005970 1.3e-11 72.8 63 47.6
Pp3c4_7890 Physcomitrium patens HOM05D000336 ORTHO05D005970 4.6e-09 64.3 64 43.8
CBR_g8387 Chara braunii HOM05D005763 ORTHO05D005970 5.1e-08 60.8 63 42.9


User provided reference genes

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