Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 2113.6 1056 100.0
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1666.0 1109 76.1
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1643.6 1109 74.6
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1106 74.8
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1622.4 1110 73.9
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1110 73.7
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1110 73.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1614.4 1103 73.3
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1108 73.6
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1106 73.4
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1137 71.2
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1597.8 1101 73.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1101 73.7
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1113 73.0
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1103 72.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1104 72.6
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1109 71.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1116 71.7
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1111 71.6
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1104 72.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1109 71.4
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1109 72.2
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1161 69.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1568.9 1114 71.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1105 71.7
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1106 72.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1109 71.7
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1109 71.8
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1110 71.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1104 70.7
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1109 71.8
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 1161 68.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1103 70.7
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1552.3 1108 70.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1102 71.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 1103 70.2
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1545.8 1097 71.1
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1542.7 1110 69.8
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1540.8 1103 71.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1100 71.0
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1104 70.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1112 70.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1107 70.3
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1103 70.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1097 70.8
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1103 69.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1103 69.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1107 70.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1101 70.2
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1528.1 1128 69.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1527.7 1091 71.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1527.7 1101 69.5
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1525.0 1097 70.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 1108 69.9
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 1099 69.2
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1521.9 1105 69.2
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1105 69.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1520.4 1107 70.0
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1517.7 1113 70.6
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1517.7 1103 68.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1516.5 1096 70.7
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1515.0 1114 68.5
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1103 68.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1508.8 1109 68.1
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1508.8 1109 69.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1100 70.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1097 70.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1504.6 1171 65.9
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1489.9 1102 67.7
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1489.9 1102 67.7
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1489.6 1106 68.8
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1486.9 1109 68.3
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1481.8 1106 68.6
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1480.3 1109 68.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1478.8 1109 68.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1476.5 1108 68.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1472.2 1107 68.1
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1468.0 1100 67.5
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 1105 66.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1466.1 996 73.8
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1458.0 1037 71.3
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 1101 66.5
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1456.8 1095 67.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1448.3 1092 66.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1444.9 1106 67.7
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1436.8 1098 65.7
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1434.9 1107 66.1
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1434.1 1101 66.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1433.3 1101 66.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1424.1 1101 66.6
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1423.3 1089 66.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1422.9 1101 65.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1421.0 1103 67.0
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1419.4 1101 66.4
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1417.5 1101 65.7
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1416.7 1005 71.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1416.0 1101 65.8
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1416.0 1101 66.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1416.0 1101 66.4
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1415.6 1101 66.4
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1414.4 1101 66.4
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1414.4 1101 66.4
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1407.1 1109 64.8
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1403.3 1069 66.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1386.7 1109 65.3
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1373.6 1131 62.9
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1369.0 1097 63.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1364.4 1001 69.0
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1340.1 1103 61.6
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1317.0 1006 67.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1291.9 1110 62.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1206.0 812 75.2
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1174.1 718 81.9
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1136.3 717 79.2
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1132.1 700 80.4
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1115.1 752 74.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 5.5e-310 1067.8 1102 50.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.8e-305 1052.7 1099 49.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 3.4e-304 1048.5 1098 50.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.5e-299 1032.3 1141 48.0
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 1.4e-297 1026.5 1103 48.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 9.4e-270 934.1 820 60.1
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.6e-269 932.2 837 56.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.6e-261 906.7 623 74.5
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 8.3e-250 867.8 913 50.3
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.0e-243 846.7 713 63.7
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 6.6e-239 831.6 514 80.0
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.1e-205 720.3 632 58.1
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.9e-202 709.9 993 44.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.4e-164 583.9 584 53.9
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.1e-164 583.2 418 70.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.4e-151 541.6 319 82.4
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.3e-121 440.3 312 71.5
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.4e-108 397.9 386 56.7
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 8.8e-66 256.5 234 53.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 7.4e-65 253.4 138 81.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.3e-64 252.7 205 61.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 7.0e-55 220.3 291 44.7
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.6e-46 191.8 159 56.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.2e-38 166.4 133 60.2
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.5e-36 158.7 149 57.7
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.4e-31 142.1 84 81.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 7.7e-30 137.1 156 47.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 8.6e-29 133.7 72 87.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 4.2e-28 131.3 108 56.5
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 3.1e-18 98.6 97 55.7
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.4e-15 89.7 123 41.5
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.3e-13 83.2 49 73.5
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.1e-12 80.1 47 83.0
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.1e-10 73.6 103 44.7
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 5.2e-10 71.2 78 42.3
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.9e-07 62.8 39 74.4


User provided reference genes

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