Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.4e-271 939.1 489 100.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 8.0e-155 551.2 523 60.6
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.7e-150 536.2 494 60.7
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.1e-143 512.3 483 59.6
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.3e-141 507.3 472 60.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 6.5e-141 505.0 470 58.7
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 5.5e-140 501.9 480 58.3
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.1e-139 500.0 470 58.1
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.4e-138 497.3 472 58.5
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.8e-136 489.6 473 57.9
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 5.9e-134 481.9 478 58.8
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 3.3e-132 476.1 475 54.7
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 4.7e-131 472.2 468 56.8
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.8e-130 470.3 470 57.2
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 6.4e-128 461.8 457 55.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.0e-125 453.0 467 53.7
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.1e-123 446.8 467 54.6
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.0e-121 440.3 471 53.9
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.7e-120 437.2 477 54.5
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 8.3e-120 434.9 499 51.5
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 8.3e-120 434.9 479 54.7
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.4e-119 433.3 469 52.5
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 7.0e-119 431.8 481 54.1
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.2e-118 431.0 486 50.6
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.0e-118 430.3 462 54.3
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.1e-116 424.5 469 52.0
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 3.3e-116 422.9 474 51.9
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.2e-115 421.0 480 52.7
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.8e-115 419.9 487 52.6
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 6.8e-114 415.2 444 55.4
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.5e-113 414.1 450 53.3
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 2.6e-113 413.3 463 51.2
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 4.9e-112 409.1 456 50.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 1.1e-111 407.9 459 51.2
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.2e-110 404.4 468 52.8
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.3e-109 401.0 443 55.1
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.5e-108 397.5 497 49.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.6e-108 395.6 487 50.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 9.5e-108 394.8 430 55.6
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.2e-107 394.4 465 50.8
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.6e-107 392.9 481 50.3
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.2e-107 392.1 470 49.6
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.1e-106 391.3 452 50.2
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.1e-106 391.3 452 50.2
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.2e-105 387.9 436 53.7
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 5.8e-105 385.6 450 51.8
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 9.9e-105 384.8 450 51.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-104 384.0 434 53.2
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.4e-103 380.2 493 47.9
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.8e-99 366.7 477 44.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.2e-97 361.3 466 46.8
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 9.9e-97 358.2 518 45.0
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.3e-88 331.3 401 52.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.9e-88 330.1 468 44.2
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.7e-85 320.9 449 43.4
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 3.1e-82 310.1 383 48.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 6.4e-80 302.4 441 46.3
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 6.4e-80 302.4 447 42.3
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.1e-74 285.0 458 42.6
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.1e-71 272.3 455 38.9
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 7.9e-70 268.9 446 39.2
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 4.3e-68 263.1 444 37.6
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.3e-67 261.5 447 37.6
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 6.9e-66 255.8 474 36.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.0e-65 254.2 446 36.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 3.4e-65 253.4 447 35.6
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 7.6e-65 252.3 434 35.9
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-64 251.5 346 48.6
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.9e-64 250.4 441 35.6
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 3.8e-64 250.0 434 35.7
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.8e-64 250.0 319 48.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 8.5e-64 248.8 434 35.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 8.5e-64 248.8 434 35.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.4e-63 248.1 387 39.8
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.2e-63 246.9 445 34.6
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 7.2e-63 245.7 456 41.0
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 6.1e-62 242.7 460 36.1
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.0e-61 241.9 448 37.3
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.0e-61 241.9 435 38.2
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.3e-61 240.7 494 33.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 6.7e-61 239.2 489 36.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 8.7e-61 238.8 432 35.2
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 8.7e-61 238.8 446 37.7
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.9e-60 237.7 440 34.8
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.9e-60 237.7 446 37.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 5.9e-57 226.1 415 38.1
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 7.7e-57 225.7 447 35.1
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.8e-56 223.4 447 35.1
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.1e-55 221.9 223 55.6
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.4e-55 221.5 373 39.1
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.5e-52 211.5 361 38.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.3e-52 210.3 442 34.2
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.3e-51 208.4 369 38.5
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.2e-51 207.6 455 33.6
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.8e-51 206.5 383 36.0
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.5e-49 201.4 455 33.4
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.3e-48 198.4 429 34.0
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.5e-47 194.1 398 33.9
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.2e-47 193.4 352 34.9
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.2e-47 192.6 348 35.3
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.4e-45 188.3 121 75.2
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 2.8e-43 180.6 383 33.2
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 2.8e-43 180.6 429 33.3
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 8.2e-43 179.1 371 32.3
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.4e-42 177.6 248 47.2
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.1e-42 175.6 325 34.5
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.7e-40 171.4 374 30.7
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.9e-40 170.6 428 31.3
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 5.0e-40 169.9 439 28.9
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 8.5e-40 169.1 383 32.4
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.2e-39 167.2 376 32.2
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 9.4e-39 165.6 383 31.6
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.6e-38 163.7 161 52.2
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.4e-37 161.8 136 55.9
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.2e-35 154.5 179 44.7
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.7e-35 153.7 388 33.0
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 6.3e-35 152.9 280 40.7
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 8.2e-35 152.5 306 36.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 8.2e-35 152.5 306 36.3
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 8.2e-35 152.5 145 53.1
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.4e-34 151.0 145 52.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.3e-34 149.8 178 46.1
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 9.1e-34 149.1 109 66.1
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.6e-33 148.3 156 50.0
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.7e-32 144.8 149 52.3
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 8.5e-32 142.5 133 57.1
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.5e-31 141.7 366 30.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 3.2e-31 140.6 344 33.1
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.2e-31 140.6 387 31.8
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.2e-31 140.2 366 30.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.1e-30 137.9 290 31.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.7e-28 129.8 179 40.8
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.4e-26 123.2 426 27.5
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.8e-24 117.1 414 27.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 8.5e-24 115.9 292 27.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.8e-22 110.9 119 51.3
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.8e-21 108.2 146 39.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 4.9e-19 100.1 120 45.0
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.1e-18 97.1 117 39.3
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.0e-17 94.7 104 47.1
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 5.0e-16 90.1 76 59.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.1e-15 89.0 163 35.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.6e-14 85.1 119 41.2
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.0e-10 69.7 67 49.3
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 4.6e-09 67.0 77 51.9
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 3.3e-07 60.8 77 42.9
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 7.3e-07 59.7 39 71.8
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 9.5e-07 59.3 65 47.7


User provided reference genes

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