Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 1.2e-225 786.2 400 100.0
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 1.2e-185 653.3 360 94.7
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 1.1e-98 364.4 365 58.4
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 4.3e-98 362.5 366 58.2
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 3.1e-96 356.3 364 57.4
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 9.9e-95 351.3 352 57.1
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 9.3e-93 344.7 364 56.0
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 2.1e-92 343.6 368 55.7
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 1.1e-88 331.3 364 52.7
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 9.0e-88 328.2 370 52.4
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 1.3e-86 324.3 372 53.5
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 1.4e-85 320.9 369 52.0
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.2e-85 319.7 363 50.1
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 2.7e-84 316.6 369 52.3
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 2.7e-84 316.6 364 51.6
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 3.5e-84 316.2 371 51.8
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 4.6e-84 315.8 370 50.3
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 7.9e-84 315.1 365 51.2
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 1.0e-83 314.7 370 50.3
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 3.0e-83 313.2 364 50.3
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 3.9e-83 312.8 364 50.3
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 3.9e-83 312.8 364 50.5
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.9e-82 310.5 355 50.1
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 3.3e-82 309.7 371 51.5
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 5.6e-82 308.9 365 52.1
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 9.6e-82 308.1 364 51.4
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 1.6e-81 307.4 365 48.5
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.1e-80 304.7 367 48.5
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 1.4e-80 304.3 368 48.9
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 3.1e-80 303.1 365 49.0
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 4.0e-80 302.8 368 50.0
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 9.0e-80 301.6 365 51.0
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 1.5e-79 300.8 363 48.5
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.4e-79 299.7 304 53.9
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 4.5e-79 299.3 361 49.9
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 4.5e-79 299.3 368 49.7
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 5.8e-79 298.9 331 54.4
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 9.9e-79 298.1 372 49.5
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 9.9e-79 298.1 377 49.3
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.3e-78 297.7 368 50.0
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.7e-78 297.4 372 48.7
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 2.2e-78 297.0 372 48.7
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.2e-78 297.0 364 50.3
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 2.9e-78 296.6 358 49.2
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 2.9e-78 296.6 368 49.5
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 8.4e-78 295.0 364 50.3
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.4e-77 294.3 365 50.1
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.4e-77 294.3 364 50.3
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 3.2e-77 293.1 372 48.4
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 9.3e-77 291.6 370 49.5
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 1.2e-76 291.2 366 50.8
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 4.6e-76 289.3 365 48.8
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 6.0e-76 288.9 359 48.7
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 6.0e-76 288.9 363 47.9
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 7.9e-76 288.5 367 48.0
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.0e-75 288.1 370 48.4
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 1.3e-75 287.7 363 48.5
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 3.9e-75 286.2 359 48.2
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 3.9e-75 286.2 359 48.2
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 5.1e-75 285.8 372 46.8
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 6.7e-75 285.4 372 46.8
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 6.7e-75 285.4 367 47.7
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 8.7e-75 285.0 379 47.2
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 1.1e-74 284.6 367 49.3
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 1.5e-74 284.3 361 49.3
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.5e-74 283.5 371 47.2
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 4.3e-74 282.7 355 47.9
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 1.3e-73 281.2 377 46.9
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 1.3e-73 281.2 365 49.3
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 2.1e-73 280.4 358 49.4
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 2.8e-73 280.0 370 47.6
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 8.1e-73 278.5 323 50.2
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 1.1e-72 278.1 363 49.9
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 1.4e-72 277.7 371 48.5
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 1.4e-72 277.7 365 46.6
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 3.1e-72 276.6 366 46.7
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 5.3e-72 275.8 363 48.8
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 1.2e-71 274.6 374 47.6
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 1.2e-71 274.6 364 47.5
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 2.0e-71 273.9 365 46.0
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 2.0e-71 273.9 361 47.4
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 3.4e-71 273.1 368 47.3
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 4.5e-71 272.7 363 47.9
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 7.6e-71 271.9 363 47.4
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 1.0e-70 271.6 377 43.8
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 1.7e-70 270.8 367 46.0
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 1.7e-70 270.8 364 47.0
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 2.9e-70 270.0 359 46.8
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 4.9e-70 269.2 321 50.8
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 4.9e-70 269.2 315 49.5
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 6.5e-70 268.9 366 46.7
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 1.4e-69 267.7 363 46.8
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 1.4e-69 267.7 362 46.7
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.9e-69 267.3 361 44.3
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 1.9e-69 267.3 367 46.9
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 2.5e-69 266.9 365 46.3
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.6e-68 264.2 369 45.8
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 3.5e-68 263.1 362 45.6
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 1.3e-67 261.2 370 46.2
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 2.3e-67 260.4 363 46.3
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 5.1e-67 259.2 412 42.5
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 3.3e-66 256.5 363 46.8
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 7.4e-66 255.4 317 49.8
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 9.6e-66 255.0 363 43.5
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 2.1e-65 253.8 363 43.5
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-64 250.4 361 43.2
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.2e-63 248.1 363 42.7
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.2e-63 248.1 365 44.7
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 2.0e-63 247.3 367 43.3
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 2.6e-63 246.9 360 42.5
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 4.5e-63 246.1 357 43.1
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 5.9e-63 245.7 363 43.3
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 7.6e-63 245.4 359 42.9
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 7.6e-63 245.4 363 42.4
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 1.0e-62 245.0 315 48.6
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 3.8e-62 243.0 368 43.5
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 6.5e-62 242.3 367 45.2
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 1.4e-61 241.1 366 41.8
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 2.5e-61 240.4 364 43.1
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 2.5e-61 240.4 371 43.9
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 1.6e-60 237.7 442 37.8
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 2.7e-60 236.9 370 41.9
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 2.7e-60 236.9 410 40.0
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.0e-59 235.0 365 42.5
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 8.7e-59 231.9 364 42.6
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 1.5e-58 231.1 367 42.2
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 2.5e-58 230.3 364 44.2
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 4.3e-58 229.6 368 42.7
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 4.3e-58 229.6 368 42.7
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 7.4e-58 228.8 363 41.9
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 6.3e-57 225.7 367 41.7
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 6.3e-57 225.7 363 41.6
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 8.2e-57 225.3 369 43.6
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-56 224.9 367 43.6
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 1.4e-56 224.6 369 42.0
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 3.1e-56 223.4 367 41.4
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 5.3e-56 222.6 364 41.5
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 6.9e-56 222.2 363 41.3
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 9.0e-56 221.9 365 40.3
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.2e-55 221.5 367 41.7
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 2.6e-55 220.3 314 43.9
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 3.8e-54 216.5 367 39.5
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 1.1e-53 214.9 354 40.7
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 4.4e-50 203.0 330 39.7
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 9.1e-48 195.3 409 35.2
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 2.7e-44 183.7 359 34.3
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 1.4e-43 181.4 360 34.2
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 3.9e-43 179.9 351 37.9
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 4.1e-40 169.9 372 38.2
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 1.2e-39 168.3 341 36.1
Rhsim05G0011100 Rhododendron simsii HOM05D003493 ORTHO05D003980 3.0e-35 153.7 149 55.7
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 9.1e-32 142.1 217 47.9
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 6.8e-27 125.9 118 51.7
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 8.8e-27 125.6 352 29.8
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 7.5e-26 122.5 373 28.7
arahy.Tifrunner.gnm1.ann1.XZC4F6 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.7e-22 111.3 315 31.4
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 2.9e-22 110.5 378 26.7
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 9.5e-21 105.5 122 45.9
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.3e-19 100.9 327 25.4
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.6e-18 97.4 318 26.1
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 3.5e-15 87.0 408 22.8
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.3e-14 84.3 218 25.7
Peaxi162Scf00050g00625 Petunia axillaris HOM05D000386 ORTHO05D000406 2.5e-13 80.9 122 42.6
CAN.G14.48 Capsicum annuum HOM05D003493 ORTHO05D003980 6.1e-12 76.3 158 37.3
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.3e-11 74.3 191 26.2
CAN.G852.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.6e-07 61.6 53 56.6
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 5.9e-07 59.7 66 51.5
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 5.9e-07 59.7 66 51.5
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 1.7e-06 58.2 63 54.0


User provided reference genes

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