Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C209T11 Lonicera japonica HOM05D000147 ORTHO05D007841 3.1e-99 365.2 190 100.0
Lj9C572G13 Lonicera japonica HOM05D000147 ORTHO05D007841 6.8e-94 347.4 188 95.7
Lj9C210G3 Lonicera japonica HOM05D000055 ORTHO05D007841 6.3e-92 340.9 189 94.2
Dinv43728 Davidia involucrata HOM05D000147 ORTHO05D007841 2.1e-66 256.1 189 73.0
CSS0036479 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D007841 1.8e-62 243.0 189 70.4
Lju1295C3G7 Lonicera japonica HOM05D000055 ORTHO05D007841 1.5e-61 240.0 187 71.7
Actinidia31433 Actinidia chinensis HOM05D000147 ORTHO05D007841 2.0e-61 239.6 189 70.4
Hma1.2p1_0532F.1_g173430 Hydrangea macrophylla HOM05D000147 ORTHO05D007841 3.4e-61 238.8 183 69.9
CiPaw.02G165900 Carya illinoinensis HOM05D000147 ORTHO05D007841 1.7e-60 236.5 189 67.2
Hma1.2p1_0532F.1_g173420 Hydrangea macrophylla HOM05D000147 ORTHO05D007841 8.4e-60 234.2 196 65.8
Prupe.2G148300 Prunus persica HOM05D000147 ORTHO05D007841 1.9e-59 233.0 191 64.9
Rhsim07G0024600 Rhododendron simsii HOM05D000147 ORTHO05D007841 3.2e-59 232.3 189 67.7
RcHm_v2.0_Chr1g0350931 Rosa chinensis HOM05D000147 ORTHO05D007841 4.2e-59 231.9 190 65.3
Atru.chr5.331 Acer truncatum HOM05D000147 ORTHO05D007841 7.1e-59 231.1 190 68.4
Haze_16839 Corylus avellana HOM05D000147 ORTHO05D007841 9.3e-59 230.7 189 67.2
HanXRQChr13g0425571 Helianthus annuus HOM05D000147 ORTHO05D007841 1.6e-58 229.9 179 67.6
Ciclev10019901m.g Citrus clementina HOM05D000147 ORTHO05D007841 2.7e-58 229.2 189 67.2
MD02G1200800 Malus domestica HOM05D000147 ORTHO05D007841 3.5e-58 228.8 189 65.1
FvH4_7g12180 Fragaria vesca HOM05D000147 ORTHO05D007841 4.6e-58 228.4 189 65.1
FAN06G3375 Fragaria x ananassa HOM05D000147 ORTHO05D007841 4.6e-58 228.4 189 65.1
FAN10G0099 Fragaria x ananassa HOM05D000147 ORTHO05D007841 4.6e-58 228.4 189 65.1
Cfa001693 Carpinus fangiana HOM05D000147 ORTHO05D007841 6.0e-58 228.0 189 66.7
Lsat_1_v5_gn_3_133581 Lactuca sativa HOM05D000147 ORTHO05D007841 1.0e-57 227.3 181 68.0
FAN10G2051 Fragaria x ananassa HOM05D000147 ORTHO05D007841 2.3e-57 226.1 189 64.6
Gohir.D07G151500 Gossypium hirsutum HOM05D000147 ORTHO05D007841 2.3e-57 226.1 189 65.1
FAN06G1976 Fragaria x ananassa HOM05D000147 ORTHO05D007841 5.1e-57 224.9 189 64.6
Thecc.07G132300 Theobroma cacao HOM05D000147 ORTHO05D007841 5.1e-57 224.9 189 63.5
THA.LOC104827616 Tarenaya hassleriana HOM05D000147 ORTHO05D007841 6.6e-57 224.6 190 63.7
Gorai.001G173400 Gossypium raimondii HOM05D000147 ORTHO05D007841 8.7e-57 224.2 189 65.1
Manes.05G043500 Manihot esculenta HOM05D000147 ORTHO05D007841 1.1e-56 223.8 189 64.0
FAN03G0084 Fragaria x ananassa HOM05D000147 ORTHO05D007841 1.5e-56 223.4 190 63.7
Cc02_g36470 Coffea canephora HOM05D000147 ORTHO05D007841 1.9e-56 223.0 189 64.6
Eucgr.D02441 Eucalyptus grandis HOM05D000147 ORTHO05D007841 2.5e-56 222.6 187 66.3
vmacro13380 Vaccinium macrocarpon HOM05D000147 ORTHO05D007841 3.3e-56 222.2 189 65.6
FAN01G2344 Fragaria x ananassa HOM05D000147 ORTHO05D007841 5.6e-56 221.5 190 63.7
Sabra14G0051100 Salix brachista HOM05D000147 ORTHO05D007841 5.6e-56 221.5 189 62.4
GSVIVG01027537001 Vitis vinifera HOM05D000147 ORTHO05D007841 5.6e-56 221.5 189 63.5
Cpa.g.sc18.146 Carica papaya HOM05D000147 ORTHO05D007841 7.3e-56 221.1 189 63.0
ECA240G0990 Erigeron canadensis HOM05D000147 ORTHO05D007841 9.6e-56 220.7 189 65.1
Gohir.A07G145300 Gossypium hirsutum HOM05D000147 ORTHO05D007841 2.1e-55 219.5 189 64.6
Solyc01g094150.3 Solanum lycopersicum HOM05D000147 ORTHO05D007841 4.0e-54 215.3 191 63.4
Aa31LG1G27000 Aethionema arabicum HOM05D000147 ORTHO05D007841 5.3e-54 214.9 187 62.6
Migut.B01655 Erythranthe guttata HOM05D000147 ORTHO05D007841 9.0e-54 214.2 189 61.9
Potri.014G071900 Populus trichocarpa HOM05D000147 ORTHO05D007841 1.2e-53 213.8 189 61.9
Sopen01g037950 Solanum pennellii HOM05D000147 ORTHO05D007841 3.4e-53 212.2 191 62.8
QL08p051831 Quercus lobata HOM05D000147 ORTHO05D007841 4.4e-53 211.8 179 65.4
Migut.O00759 Erythranthe guttata HOM05D000147 ORTHO05D007841 7.6e-53 211.1 189 60.8
MSTRG.17211 Avicennia marina HOM05D000147 ORTHO05D007841 1.7e-52 209.9 189 61.4
Thhalv10001419m.g Eutrema salsugineum HOM05D000147 ORTHO05D007841 2.2e-52 209.5 190 61.1
Actinidia12275 Actinidia chinensis HOM05D000147 ORTHO05D007841 4.9e-52 208.4 182 64.8
Peaxi162Scf00416g00418 Petunia axillaris HOM05D000147 ORTHO05D007841 6.4e-52 208.0 190 61.6
PGR031G2670 Punica granatum HOM05D000147 ORTHO05D007841 8.4e-52 207.6 188 61.7
arahy.Tifrunner.gnm1.ann1.W5K1B8 Arachis hypogaea HOM05D000147 ORTHO05D007841 1.9e-51 206.5 178 63.5
arahy.Tifrunner.gnm1.ann1.WCLM28 Arachis hypogaea HOM05D000147 ORTHO05D007841 3.2e-51 205.7 178 63.5
TAR629G3167 Trochodendron aralioides HOM05D000147 ORTHO05D007841 4.2e-51 205.3 188 59.6
Medtr7g075520 Medicago truncatula HOM05D000147 ORTHO05D007841 2.7e-50 202.6 180 61.1
BcaB06g29419 Brassica carinata HOM05D000147 ORTHO05D007841 3.5e-50 202.2 190 57.9
Carub.0004s2811 Capsella rubella HOM05D000147 ORTHO05D007841 3.5e-50 202.2 190 58.4
DCAR_006880 Daucus carota HOM05D000147 ORTHO05D007841 4.6e-50 201.8 188 60.6
AL4G44670 Arabidopsis lyrata HOM05D000147 ORTHO05D007841 1.3e-49 200.3 190 57.9
Oeu036608.1 Olea europaea HOM05D000147 ORTHO05D007841 1.3e-49 200.3 191 60.2
Nitab4.5_0008545g0050 Nicotiana tabacum HOM05D000147 ORTHO05D007841 2.3e-49 199.5 203 57.6
TPR.G26950 Trifolium pratense HOM05D000147 ORTHO05D007841 3.0e-49 199.1 187 59.9
Ca_07834_v3 Cicer arietinum L. HOM05D000147 ORTHO05D007841 3.9e-49 198.7 180 60.0
COL.COLO4_12580 Corchorus olitorius HOM05D000147 ORTHO05D007841 3.9e-49 198.7 189 57.1
CARHR140690 Cardamine hirsuta HOM05D000147 ORTHO05D007841 5.1e-49 198.4 189 57.1
Nitab4.5_0002436g0040 Nicotiana tabacum HOM05D000147 ORTHO05D007841 6.6e-49 198.0 203 57.1
C04p06460 Brassica napus HOM05D000147 ORTHO05D007841 8.7e-49 197.6 184 58.7
BraA05t19522Z Brassica rapa HOM05D000147 ORTHO05D007841 1.5e-48 196.8 184 59.8
MELO3C006171.2 Cucumis melo HOM05D000147 ORTHO05D007841 1.5e-48 196.8 185 60.0
BolC4t22269H Brassica oleracea HOM05D000147 ORTHO05D007841 2.5e-48 196.1 184 59.2
Sed0028198 Sechium edule HOM05D000147 ORTHO05D007841 2.5e-48 196.1 187 59.9
Hund27358 Selenicereus undatus HOM05D000147 ORTHO05D007841 2.5e-48 196.1 191 55.0
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 3.3e-48 195.7 186 60.2
BcaC02g07086 Brassica carinata HOM05D000147 ORTHO05D007841 4.3e-48 195.3 188 58.5
Duzib133G1541 Durio zibethinus HOM05D000147 ORTHO05D007841 7.3e-48 194.5 189 59.3
Lj1g0021065 Lotus japonicus HOM05D000147 ORTHO05D007841 1.3e-47 193.7 178 61.8
Glyma.18G222400 Glycine max HOM05D000147 ORTHO05D007841 1.6e-47 193.4 179 59.8
Psat3g114560 Pisum sativum HOM05D000147 ORTHO05D007841 1.6e-47 193.4 182 60.4
Sc02g0002430 Simmondsia chinensis HOM05D000147 ORTHO05D007841 1.6e-47 193.4 194 57.2
Sc02g0002480 Simmondsia chinensis HOM05D000108 ORTHO05D001724 1.6e-47 193.4 194 57.2
A05p05520 Brassica napus HOM05D000147 ORTHO05D007841 2.8e-47 192.6 184 58.7
CANSAT56G2956 Cannabis sativa HOM05D000147 ORTHO05D007841 2.8e-47 192.6 203 55.2
CsaV3_3G009500 Cucumis sativus L. HOM05D000147 ORTHO05D007841 2.8e-47 192.6 185 58.9
Glyma.09G267500 Glycine max HOM05D000147 ORTHO05D007841 2.8e-47 192.6 179 59.8
Lj9A209G27 Lonicera japonica HOM05D000147 ORTHO05D007841 3.6e-47 192.2 128 83.6
Sp4g27530 Schrenkiella parvula HOM05D000147 ORTHO05D007841 4.8e-47 191.8 189 58.2
unitig_26.g9725 Utricularia gibba HOM05D000968 ORTHO05D007841 6.2e-47 191.4 186 59.7
Aqoxy7G00545 Aquilegia oxysepala HOM05D000147 ORTHO05D007841 1.1e-46 190.7 180 58.9
Lalb_Chr01g0021291 Lupinus albus HOM05D000147 ORTHO05D007841 1.4e-46 190.3 179 58.7
BcaB02g09001 Brassica carinata HOM05D000147 ORTHO05D007841 1.8e-46 189.9 182 57.1
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.8e-46 189.9 191 58.1
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.8e-46 189.9 191 58.1
Ah.05g175240 Amaranthus hybridus HOM05D000147 ORTHO05D007841 5.3e-46 188.3 185 54.6
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 9.0e-46 187.6 187 57.8
VMungo1383G3024 Vigna mungo HOM05D000147 ORTHO05D007841 3.4e-45 185.7 188 57.4
Phvul.008G074900 Phaseolus vulgaris HOM05D000147 ORTHO05D007841 5.8e-45 184.9 188 57.4
MBI12_g33357_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D007841 7.6e-45 184.5 182 54.4
PSO782G4322 Papaver somniferum HOM05D000147 ORTHO05D007841 9.9e-45 184.1 192 55.2
ClCG05G002060 Citrullus lanatus HOM05D000147 ORTHO05D007841 3.8e-44 182.2 186 58.1
PSO478G4229 Papaver somniferum HOM05D000147 ORTHO05D007841 1.2e-42 177.2 191 56.0
AUR62004238 Chenopodium quinoa HOM05D000147 ORTHO05D007841 6.0e-42 174.9 185 52.4
Nn1g01162 Nelumbo nucifera HOM05D000147 ORTHO05D007841 1.5e-40 170.2 196 51.0
CAN.G78.14 Capsicum annuum HOM05D000147 ORTHO05D007841 2.4e-38 162.9 139 66.9
SGA_v2.0_scaffold153G37038 Striga asiatica HOM05D000147 ORTHO05D020553 7.6e-37 157.9 103 78.6
EL10Ac1g00931 Beta vulgaris HOM05D000147 ORTHO05D007841 3.8e-36 155.6 257 40.1
PGSC0003DMG401000018 Solanum tuberosum HOM05D000147 ORTHO05D020553 3.8e-36 155.6 105 75.2
HPP92_020937 Vanilla planifolia HOM05D000147 ORTHO05D007841 1.4e-35 153.7 178 49.4
Lj9C300G14 Lonicera japonica HOM05D000055 ORTHO05D007841 4.2e-35 152.1 87 90.8
HPP92_020955 Vanilla planifolia HOM05D000147 ORTHO05D007841 7.1e-35 151.4 178 48.3
Zm00001eb378370 Zea mays HOM05D000147 ORTHO05D007841 1.9e-32 143.3 196 42.9
Os06g0130000 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D007841 4.3e-32 142.1 201 43.8
MBI12_g37711_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D007841 1.3e-31 140.6 184 50.5
CDE04G0102 Ceratophyllum demersum HOM05D000147 ORTHO05D007841 3.1e-30 136.0 198 40.9
Lj9C209T8 Lonicera japonica HOM05D000147 ORTHO05D020553 4.5e-29 132.1 65 98.5
ATR0757G121 Amborella trichopoda HOM05D000147 ORTHO05D007841 1.0e-25 120.9 180 42.2
AUR62013610 Chenopodium quinoa HOM05D000147 ORTHO05D007841 1.1e-24 117.5 185 41.6
Pp3c11_13620 Physcomitrium patens HOM05D000147 ORTHO05D007841 9.7e-24 114.4 189 39.7
Mapoly0103s0050 Marchantia polymorpha HOM05D000147 ORTHO05D007841 1.1e-22 110.9 191 38.2
Zm00001eb269570 Zea mays HOM05D000147 ORTHO05D020553 5.3e-22 108.6 124 47.6
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 4.2e-19 99.0 73 68.5
SMO169G0088 Selaginella moellendorffii HOM05D000147 ORTHO05D007841 6.7e-17 91.7 188 35.1
Dinv43836 Davidia involucrata HOM05D000147 ORTHO05D020553 3.0e-09 66.2 43 74.4
CBR_g39027 Chara braunii HOM05D000147 ORTHO05D007841 2.8e-07 59.7 89 32.6
RcHm_v2.0_Chr1g0351021 Rosa chinensis HOM05D000147 ORTHO05D020553 6.3e-07 58.5 40 75.0
HanXRQChr13g0425601 Helianthus annuus HOM05D000147 ORTHO05D007841 9.1e-06 54.7 42 73.8


User provided reference genes

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