Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1365.5 694 100.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1147.1 695 84.5
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1127.1 696 81.6
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 0.0e+00 1120.9 694 82.0
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1117.1 691 81.5
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1115.1 739 78.9
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 0.0e+00 1111.3 691 82.1
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1109.7 691 81.5
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1107.0 691 81.2
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 0.0e+00 1106.3 694 81.3
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1105.9 691 81.3
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1102.0 695 81.0
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 0.0e+00 1100.5 698 80.8
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1096.6 695 80.7
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1093.6 697 80.5
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1092.8 694 80.0
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1092.0 703 79.4
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1090.1 694 79.8
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1089.7 697 79.8
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 0.0e+00 1087.4 710 79.7
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1086.2 698 80.2
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 0.0e+00 1083.6 691 78.6
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1083.2 697 80.5
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1082.8 697 80.5
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1082.0 691 79.5
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1080.9 694 80.1
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 0.0e+00 1080.5 697 78.9
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 0.0e+00 1079.3 693 79.8
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 0.0e+00 1078.9 693 80.2
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1076.6 698 80.1
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 0.0e+00 1075.5 741 75.6
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 4.7e-312 1074.7 694 79.1
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 9.5e-312 1072.8 730 76.3
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 1.4e-311 1072.4 695 79.6
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 5.7e-311 1070.5 694 78.2
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 5.7e-311 1070.5 693 79.1
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 1.6e-310 1068.9 695 78.6
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 8.0e-310 1066.6 693 78.9
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 1.0e-309 1066.2 690 79.7
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.3e-309 1065.1 693 76.9
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 5.2e-309 1063.9 697 79.3
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.2e-308 1062.8 692 79.0
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 2.0e-308 1062.0 690 79.0
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 4.4e-308 1060.8 698 78.4
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 1.7e-307 1058.9 696 77.6
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 2.2e-307 1058.5 695 78.7
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 4.9e-307 1057.4 697 76.6
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.2e-305 1052.7 690 77.8
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 680 79.9
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.0e-304 1049.7 696 77.7
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.9e-303 1045.4 697 77.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 2.5e-303 1045.0 697 78.2
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.2e-301 1037.3 688 77.0
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 8.9e-301 1036.6 722 72.3
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 8.9e-301 1036.6 800 68.5
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 693 77.8
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.3e-299 1032.7 688 76.6
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.9e-299 1031.6 692 75.4
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 3.7e-299 1031.2 692 76.2
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 3.2e-298 1028.1 696 76.7
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 5.4e-298 1027.3 691 75.7
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 7.0e-298 1026.9 648 81.0
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.6e-297 1025.8 694 75.9
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 2.0e-297 1025.4 692 75.7
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 3.0e-296 1021.5 695 75.1
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.9e-295 1018.8 696 75.4
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.6e-294 1015.8 693 76.5
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.4e-293 1012.7 694 74.8
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 2.0e-292 1008.8 694 74.8
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 1.1e-290 1003.0 694 74.5
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 1.4e-290 1002.7 695 74.5
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 5.4e-290 1000.7 697 73.3
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 1.0e-288 996.5 695 74.1
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 1.3e-288 996.1 695 74.1
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 2.3e-288 995.3 695 73.8
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 3.9e-288 994.6 695 74.0
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 3.9e-288 994.6 695 74.0
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 5.0e-288 994.2 696 74.1
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 5.6e-287 990.7 694 73.3
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 3.1e-285 984.9 692 73.3
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 3.1e-285 984.9 691 72.6
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 1.2e-284 983.0 693 73.7
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 9.8e-284 979.9 695 73.2
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.1e-273 945.7 556 86.5
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 7.8e-273 943.7 700 70.0
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 1.1e-261 906.7 775 64.4
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 2.4e-261 905.6 1198 46.6
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.2e-260 903.3 687 68.1
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.2e-258 895.2 693 67.1
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 1.8e-248 862.8 718 63.1
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.5e-244 849.7 572 75.9
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 3.6e-233 812.0 725 58.6
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 5.0e-227 791.6 538 76.4
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 8.5e-227 790.8 512 79.1
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.8e-216 754.2 469 80.4
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.5e-215 753.4 517 74.3
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.2e-209 733.8 646 59.6
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 6.3e-206 721.5 697 57.2
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.4e-192 677.2 419 80.9
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.0e-139 500.0 717 41.4
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 6.2e-137 492.3 729 41.3
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 9.9e-135 485.0 697 46.1
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.1e-133 481.5 695 45.3
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 1.5e-130 471.1 708 39.4
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 5.8e-127 459.1 270 87.0
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 9.3e-125 451.8 275 86.5
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.6e-119 433.7 663 43.6
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.6e-116 424.5 474 50.0
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.2e-110 404.1 232 87.9
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.6e-100 371.3 423 52.7
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 9.7e-90 335.5 246 70.3
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.4e-88 331.6 678 35.3
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 2.7e-79 300.8 295 59.0
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.1e-77 295.4 221 69.2
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 4.0e-67 260.4 201 70.1
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 8.6e-62 242.7 167 71.3
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 9.5e-45 186.0 143 71.3
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 9.5e-45 186.0 143 71.3
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 8.4e-41 172.9 101 83.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 4.0e-35 154.1 125 69.6
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.6e-31 142.1 115 60.9
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 5.4e-24 117.1 84 63.1
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.3e-20 105.9 214 36.9
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 2.9e-17 94.7 150 39.3
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.5e-16 91.7 74 70.3
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 4.6e-15 87.4 64 70.3


User provided reference genes

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