Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A98T12 Lonicera japonica HOM05D001845 ORTHO05D001878 2.7e-220 768.5 415 100.0
Lj9A97T17 Lonicera japonica HOM05D001845 ORTHO05D001878 3.7e-201 704.9 406 95.6
Lju1040A2G24 Lonicera japonica HOM05D001845 ORTHO05D001878 3.5e-188 661.8 383 95.0
Lj9P115T4 Lonicera japonica HOM05D001845 ORTHO05D001878 5.0e-182 641.3 342 97.7
Lju515C2G3 Lonicera japonica HOM05D001845 ORTHO05D001878 3.2e-165 585.5 352 88.9
Lju963A5T21 Lonicera japonica HOM05D001845 ORTHO05D001878 4.3e-141 505.4 418 74.9
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 3.0e-86 323.2 532 47.9
DCAR_003338 Daucus carota HOM05D001845 ORTHO05D001878 3.3e-77 293.1 416 52.6
GSVIVG01000088001 Vitis vinifera HOM05D001845 ORTHO05D001878 8.2e-76 288.5 435 51.0
QL03p007735 Quercus lobata HOM05D001845 ORTHO05D001878 1.9e-72 277.3 419 50.8
Cfa006600 Carpinus fangiana HOM05D001845 ORTHO05D001878 5.5e-72 275.8 437 50.6
QL03p007369 Quercus lobata HOM05D001845 ORTHO05D001878 4.6e-71 272.7 419 50.4
Haze_04183 Corylus avellana HOM05D001845 ORTHO05D001878 1.5e-69 267.7 437 49.7
CiPaw.08G163900 Carya illinoinensis HOM05D001845 ORTHO05D001878 3.7e-68 263.1 426 48.8
Ciclev10000263m.g Citrus clementina HOM05D001845 ORTHO05D001878 4.8e-68 262.7 429 49.0
Actinidia23645 Actinidia chinensis HOM05D001845 ORTHO05D001878 3.4e-66 256.5 419 43.4
TWI56G0127 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 1.0e-62 245.0 433 48.0
Solyc01g099230.3 Solanum lycopersicum HOM05D001845 ORTHO05D001878 1.4e-62 244.6 430 46.3
CAN.G1034.30 Capsicum annuum HOM05D001845 ORTHO05D001878 5.7e-61 239.2 466 43.6
PGSC0003DMG400024695 Solanum tuberosum HOM05D001845 ORTHO05D001878 7.4e-61 238.8 430 45.3
CSS0024731 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 1.4e-59 234.6 425 45.9
Sopen01g042780 Solanum pennellii HOM05D001845 ORTHO05D001878 1.4e-59 234.6 336 51.8
Sabra13G0024500 Salix brachista HOM05D001845 ORTHO05D001878 2.4e-59 233.8 420 47.1
Cc02_g33300 Coffea canephora HOM05D001845 ORTHO05D001878 6.5e-57 225.7 422 45.5
Potri.013G022300 Populus trichocarpa HOM05D001845 ORTHO05D001878 6.5e-57 225.7 416 46.4
Peaxi162Scf00037g00630 Petunia axillaris HOM05D001845 ORTHO05D001878 8.5e-57 225.3 422 45.5
Potri.005G033000 Populus trichocarpa HOM05D001845 ORTHO05D001878 1.9e-56 224.2 414 46.9
Thecc.05G301200 Theobroma cacao HOM05D001845 ORTHO05D001878 4.2e-56 223.0 426 44.6
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 5.5e-56 222.6 441 41.5
Hund07077 Selenicereus undatus HOM05D001845 ORTHO05D001878 6.1e-55 219.2 445 43.1
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 7.9e-55 218.8 436 44.7
Oeu020847.1 Olea europaea HOM05D001845 ORTHO05D001878 7.9e-55 218.8 394 48.0
vmacro04985 Vaccinium macrocarpon HOM05D001845 ORTHO05D001878 7.9e-55 218.8 410 46.6
Hma1.2p1_1077F.1_g254715 Hydrangea macrophylla HOM05D001845 ORTHO05D001878 3.9e-54 216.5 401 47.9
MD12G1217600 Malus domestica HOM05D001845 ORTHO05D001878 2.6e-53 213.8 420 45.2
MSTRG.27990 Avicennia marina HOM05D001845 ORTHO05D001878 7.4e-53 212.2 418 43.1
RcHm_v2.0_Chr3g0455171 Rosa chinensis HOM05D001845 ORTHO05D001878 1.7e-52 211.1 447 44.3
Prupe.6G323900 Prunus persica HOM05D001845 ORTHO05D001878 4.8e-52 209.5 465 40.9
ECA236G3954 Erigeron canadensis HOM05D001845 ORTHO05D001878 1.4e-51 208.0 430 43.7
Eucgr.B01944 Eucalyptus grandis HOM05D001845 ORTHO05D001878 4.1e-51 206.5 357 48.2
Cpa.g.sc48.69 Carica papaya HOM05D001845 ORTHO05D001878 7.0e-51 205.7 383 46.0
Gohir.A08G210000 Gossypium hirsutum HOM05D001845 ORTHO05D001878 2.0e-50 204.1 427 45.7
MBI18_g01959_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 2.0e-50 204.1 461 43.0
Gohir.D08G226900 Gossypium hirsutum HOM05D001845 ORTHO05D001878 5.9e-50 202.6 427 45.2
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.7e-49 201.1 449 43.4
HanXRQChr11g0339591 Helianthus annuus HOM05D001845 ORTHO05D001878 2.9e-49 200.3 267 55.8
Lsat_1_v5_gn_9_86880 Lactuca sativa HOM05D001845 ORTHO05D001878 1.1e-48 198.4 412 43.2
Nn4g25950 Nelumbo nucifera HOM05D001845 ORTHO05D001878 1.5e-48 198.0 439 41.9
Nitab4.5_0022112g0010 Nicotiana tabacum HOM05D001845 ORTHO05D001878 1.9e-48 197.6 427 38.2
SGA_v2.0_scaffold80G25789 Striga asiatica HOM05D001845 ORTHO05D001878 7.2e-48 195.7 321 48.3
Lalb_Chr04g0260711 Lupinus albus HOM05D001845 ORTHO05D001878 9.4e-48 195.3 332 47.0
Rhsim07G0183400 Rhododendron simsii HOM05D001845 ORTHO05D001878 1.2e-47 194.9 397 44.1
Lj1g0025433 Lotus japonicus HOM05D001845 ORTHO05D001878 2.7e-47 193.7 330 44.8
Gorai.004G240800 Gossypium raimondii HOM05D001845 ORTHO05D001878 1.4e-46 191.4 427 44.0
Gohir.A11G265500 Gossypium hirsutum HOM05D001845 ORTHO05D001878 1.8e-46 191.0 425 42.4
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 4.0e-46 189.9 447 41.6
AUR62000810 Chenopodium quinoa HOM05D001845 ORTHO05D001878 1.2e-45 188.3 417 42.2
Sc16g0008490 Simmondsia chinensis HOM05D001845 ORTHO05D001878 2.0e-45 187.6 426 42.0
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 4.4e-45 186.4 446 41.0
Gohir.D11G275700 Gossypium hirsutum HOM05D001845 ORTHO05D001878 5.7e-45 186.0 419 41.5
AUR62005158 Chenopodium quinoa HOM05D001845 ORTHO05D001878 9.7e-45 185.3 430 41.6
Gorai.007G297700 Gossypium raimondii HOM05D001845 ORTHO05D001878 3.7e-44 183.3 431 41.3
arahy.Tifrunner.gnm1.ann1.F7SKJA Arachis hypogaea HOM05D000005 ORTHO05D000012 1.8e-43 181.0 315 46.0
MD04G1203800 Malus domestica HOM05D001845 ORTHO05D001878 2.4e-43 180.6 439 37.4
FvH4_6g06160 Fragaria vesca HOM05D001845 ORTHO05D001878 3.1e-43 180.3 447 40.9
PSO170G3888 Papaver somniferum HOM05D001845 ORTHO05D001878 3.1e-43 180.3 415 43.6
ClCG02G015620 Citrullus lanatus HOM05D001845 ORTHO05D001878 5.3e-43 179.5 417 43.4
Aqoxy2G03066 Aquilegia oxysepala HOM05D001845 ORTHO05D001878 1.2e-42 178.3 358 45.0
Sabra05G0035200 Salix brachista HOM05D001845 ORTHO05D001878 2.0e-42 177.6 410 44.9
CsaV3_2G006480 Cucumis sativus L. HOM05D001845 ORTHO05D001878 2.7e-42 177.2 388 44.1
Sed0021528 Sechium edule HOM05D001845 ORTHO05D001878 4.5e-42 176.4 417 41.2
EL10Ac4g09370 Beta vulgaris HOM05D001845 ORTHO05D001878 2.2e-41 174.1 416 41.3
MELO3C004239.2 Cucumis melo HOM05D001845 ORTHO05D001878 3.8e-41 173.3 391 44.0
BcaB07g31110 Brassica carinata HOM05D001845 ORTHO05D001878 5.0e-41 172.9 324 46.0
A09p19240 Brassica napus HOM05D001845 ORTHO05D001878 8.5e-41 172.2 359 43.2
BraA09t37542Z Brassica rapa HOM05D001845 ORTHO05D001878 8.5e-41 172.2 359 43.2
Glyma.19G234800 Glycine max HOM05D001845 ORTHO05D001878 8.5e-41 172.2 387 41.3
BolC9t55342H Brassica oleracea HOM05D001845 ORTHO05D001878 3.2e-40 170.2 359 42.9
PSO210G5619 Papaver somniferum HOM05D001845 ORTHO05D001878 4.2e-40 169.9 425 44.5
BcaC04g22036 Brassica carinata HOM05D001845 ORTHO05D001878 5.5e-40 169.5 332 45.8
Medtr7g113360 Medicago truncatula HOM05D001845 ORTHO05D001878 7.2e-40 169.1 353 44.2
VMungo0540G0154 Vigna mungo HOM05D001845 ORTHO05D001878 9.4e-40 168.7 307 45.6
Ca_05811_v3 Cicer arietinum L. HOM05D001845 ORTHO05D001878 1.6e-39 167.9 326 44.5
Glyma.03G237100 Glycine max HOM05D001845 ORTHO05D001878 6.1e-39 166.0 312 44.9
Nitab4.5_0003156g0070 Nicotiana tabacum HOM05D001845 ORTHO05D001878 6.1e-39 166.0 434 34.8
Thhalv10023272m.g Eutrema salsugineum HOM05D001845 ORTHO05D001878 1.4e-38 164.9 331 44.7
Phvul.006G091200 Phaseolus vulgaris HOM05D001845 ORTHO05D001878 2.3e-38 164.1 313 44.7
C09p24250 Brassica napus HOM05D001845 ORTHO05D001878 2.2e-36 157.5 262 47.7
SpUn0004_0260 Schrenkiella parvula HOM05D001845 ORTHO05D001878 3.7e-36 156.8 320 45.6
AL1G65690 Arabidopsis lyrata HOM05D001845 ORTHO05D001878 5.4e-35 152.9 362 39.8
Psat0s2406g0200 Pisum sativum HOM05D001845 ORTHO05D001878 5.4e-35 152.9 382 39.5
Carub.0002s0804 Capsella rubella HOM05D001845 ORTHO05D001878 2.0e-34 151.0 312 44.2
Aa31LG2G11680 Aethionema arabicum HOM05D001845 ORTHO05D001878 7.7e-34 149.1 326 42.6
TPR.G33222 Trifolium pratense HOM05D001845 ORTHO05D001878 1.0e-33 148.7 368 40.2
CARHR289670 Cardamine hirsuta HOM05D001845 ORTHO05D001878 4.2e-32 143.3 325 43.1
Os07g0404300 Oryza sativa ssp. japonica HOM05D001845 ORTHO05D001878 9.5e-32 142.1 405 38.3
Zm00001eb094690 Zea mays HOM05D001845 ORTHO05D001878 2.1e-31 141.0 371 38.8
THA.LOC104805882 Tarenaya hassleriana HOM05D001845 ORTHO05D001878 1.8e-30 137.9 409 38.6
TAR633G2292 Trochodendron aralioides HOM05D001845 ORTHO05D001878 3.0e-30 137.1 279 41.9
CDE02G3862 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 4.4e-29 133.3 446 37.0
HPP92_001915 Vanilla planifolia HOM05D001845 ORTHO05D001878 7.5e-29 132.5 392 38.0
TAR633G1507 Trochodendron aralioides HOM05D001845 ORTHO05D001878 9.8e-29 132.1 131 69.5
Ah.04g160340 Amaranthus hybridus HOM05D001845 ORTHO05D001878 4.9e-28 129.8 352 39.2
CDE08G0713 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 1.8e-27 127.9 460 35.2
SHI43581 Sapria himalayana HOM05D001845 ORTHO05D001878 9.2e-27 125.6 238 47.5
Migut.N02069 Erythranthe guttata HOM05D001845 ORTHO05D001878 2.9e-25 120.6 201 51.7
Atru.chr11.202 Acer truncatum HOM05D001845 ORTHO05D026223 4.7e-23 113.2 180 46.7
AT1G55040 Arabidopsis thaliana HOM05D001845 ORTHO05D001878 8.0e-23 112.5 420 36.4
TAR365G0654 Trochodendron aralioides HOM05D001845 ORTHO05D026223 5.7e-21 106.3 336 32.4
ATR0706G175 Amborella trichopoda HOM05D001845 ORTHO05D001878 1.1e-19 102.1 451 34.1
Migut.N02063 Erythranthe guttata HOM05D001845 ORTHO05D001878 1.4e-11 75.1 33 90.9
SEGI_38156 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 2.7e-10 70.9 425 30.8
RcHm_v2.0_Chr1g0324471 Rosa chinensis HOM05D001845 ORTHO05D001878 1.0e-09 68.9 68 77.9
Dinv05827 Davidia involucrata HOM05D001845 ORTHO05D026223 5.0e-09 66.6 45 75.6
Nitab4.5_0000137g0050 Nicotiana tabacum HOM05D001845 ORTHO05D001878 6.6e-09 66.2 107 34.6
CDE11G0688 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 8.6e-09 65.9 248 36.7
Atru.chr2.366 Acer truncatum HOM05D001845 ORTHO05D026223 7.3e-08 62.8 108 39.8
Actinidia37830 Actinidia chinensis HOM05D006453 ORTHO05D008280 4.7e-07 60.1 33 69.7
ATR0178G031 Amborella trichopoda HOM05D001845 ORTHO05D001878 1.1e-06 58.9 34 67.6
Lj2C416G9 Lonicera japonica HOM05D006453 ORTHO05D008280 1.1e-06 58.9 33 66.7
Lsat_1_v5_gn_4_12640 Lactuca sativa HOM05D001845 ORTHO05D001878 1.4e-06 58.5 32 71.9
SGA_v2.0_scaffold12G06081 Striga asiatica HOM05D006453 ORTHO05D008280 1.8e-06 58.2 32 68.8
Actinidia28139 Actinidia chinensis HOM05D001845 ORTHO05D053013 4.0e-06 57.0 33 69.7
Sc07g0007630 Simmondsia chinensis HOM05D006453 ORTHO05D008280 5.2e-06 56.6 29 79.3


User provided reference genes

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