Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 9.8e-203 709.9 359 100.0
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-134 482.3 361 74.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.0e-128 461.1 361 71.7
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-107 392.1 263 80.6
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 7.2e-105 384.8 296 70.9
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 5.0e-98 362.1 361 56.5
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.5e-89 334.0 361 52.9
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.6e-86 323.2 361 51.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.6e-83 313.9 361 50.4
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 3.5e-83 312.8 360 50.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.3e-82 310.1 362 50.8
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.9e-82 309.3 360 49.2
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 5.1e-82 308.9 361 50.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.8e-80 303.1 360 49.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 6.2e-80 302.0 359 48.5
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 3.1e-79 299.7 360 48.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.0e-78 297.0 360 49.2
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 4.4e-78 295.8 368 48.6
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 5.8e-78 295.4 204 77.9
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.7e-77 293.9 361 47.9
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.2e-77 293.5 359 47.6
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.2e-77 293.5 361 47.6
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.9e-77 293.1 360 48.6
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.7e-77 292.7 361 50.1
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 6.4e-77 292.0 361 48.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.1e-76 289.3 361 49.6
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 5.4e-76 288.9 359 47.4
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 5.4e-76 288.9 361 47.6
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 5.4e-76 288.9 360 48.3
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 7.1e-76 288.5 361 47.4
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 7.1e-76 288.5 306 58.2
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 9.2e-76 288.1 361 49.0
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 9.2e-76 288.1 362 46.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 3.5e-75 286.2 360 47.2
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.0e-74 284.6 361 46.5
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.3e-74 284.3 364 46.7
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.3e-74 284.3 361 48.2
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-74 283.5 359 49.6
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.1e-73 281.2 361 47.1
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 3.3e-73 279.6 361 44.6
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.6e-72 277.3 362 47.2
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.1e-72 276.9 362 43.9
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.1e-72 276.9 366 44.5
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.1e-72 276.9 362 45.0
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.7e-72 275.8 361 46.8
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 6.2e-72 275.4 361 45.7
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 6.2e-72 275.4 361 46.3
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.2e-72 275.4 369 45.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 8.1e-72 275.0 361 46.8
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 8.1e-72 275.0 361 46.5
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.1e-71 274.6 362 45.0
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.1e-71 274.6 361 44.9
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.1e-71 274.6 361 46.5
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 2.4e-71 273.5 372 43.8
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.4e-71 273.5 362 46.1
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.4e-71 273.5 361 45.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.8e-71 271.9 357 45.9
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 8.9e-71 271.6 361 46.0
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.9e-71 271.6 361 45.2
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.5e-70 270.8 362 46.7
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.5e-70 270.8 361 46.3
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-70 270.4 364 44.2
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 2.0e-70 270.4 364 44.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 4.4e-70 269.2 362 44.2
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.7e-69 267.3 361 46.0
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 3.8e-69 266.2 367 44.7
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.1e-68 264.6 361 44.6
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.4e-68 264.2 375 44.0
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.9e-68 263.8 365 43.6
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.9e-68 263.8 365 43.6
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 4.2e-68 262.7 365 43.6
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 4.2e-68 262.7 365 43.6
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 7.1e-68 261.9 362 43.6
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 9.2e-68 261.5 362 45.6
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 2.7e-67 260.0 361 44.6
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.7e-67 260.0 364 44.8
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.7e-67 260.0 414 41.1
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 6.0e-67 258.8 361 42.4
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 6.0e-67 258.8 360 43.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.7e-66 257.3 359 43.2
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.7e-66 257.3 357 44.0
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.9e-66 256.1 329 48.9
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-65 253.8 236 64.0
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 4.3e-65 252.7 367 43.3
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.3e-64 251.1 362 45.3
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 6.2e-64 248.8 378 42.9
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 8.1e-64 248.4 265 51.3
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 5.3e-63 245.7 350 44.0
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 6.9e-63 245.4 360 43.6
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.2e-62 244.6 363 43.8
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.0e-62 243.8 362 42.8
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 4.9e-61 239.2 363 43.0
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 4.2e-60 236.1 366 42.9
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 3.5e-59 233.0 262 49.6
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 7.8e-59 231.9 348 42.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.0e-58 229.9 263 50.6
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.6e-58 228.8 264 51.1
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.1e-57 228.0 365 41.6
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.5e-57 226.9 323 43.0
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.1e-56 223.8 264 48.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 6.2e-56 222.2 262 49.2
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.8e-55 220.7 263 51.7
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-54 217.6 268 48.5
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.9e-53 213.4 363 41.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.9e-53 213.4 341 40.8
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 9.3e-52 208.4 301 44.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.0e-50 203.4 232 52.6
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.5e-49 200.3 362 38.7
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 3.7e-48 196.4 363 38.0
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 9.0e-47 191.8 374 34.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.4e-46 189.9 270 44.4
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.4e-46 189.9 341 38.1
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 9.3e-44 181.8 213 47.9
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.7e-42 175.3 111 74.8
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.2e-38 164.9 193 49.7
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-38 164.9 183 56.8
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-37 161.0 236 45.8
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 5.5e-36 156.0 543 28.5
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-34 150.6 134 62.7
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-33 148.3 360 35.8
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 9.7e-33 145.2 364 33.5
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 4.8e-32 142.9 106 65.1
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 8.2e-32 142.1 169 46.7
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-31 139.0 91 75.8
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.5e-30 137.9 372 31.5
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 4.5e-30 136.3 361 28.3
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 7.2e-28 129.0 109 54.1
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.4e-28 128.6 130 62.3
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 8.8e-26 122.1 156 45.5
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.4e-23 114.8 363 29.8
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-23 114.4 361 30.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.1e-23 113.2 74 75.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 6.1e-19 99.4 136 45.6
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.8e-18 97.8 168 38.7
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 6.5e-13 79.3 360 27.2
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.6e-11 74.7 55 63.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-10 71.6 34 100.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.8e-08 63.9 42 71.4
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.4e-07 60.8 49 61.2
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 5.9e-06 56.2 372 21.5


User provided reference genes

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