Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A80T24 Lonicera japonica HOM05D000001 ORTHO05D009286 2.0e-29 131.7 64 100.0
Migut.B01034 Erythranthe guttata HOM05D000001 ORTHO05D009286 4.0e-14 80.9 41 80.5
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 5.2e-14 80.5 41 82.9
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 5.2e-14 80.5 41 82.9
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 6.8e-14 80.1 41 82.9
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 6.8e-14 80.1 47 76.6
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 6.8e-14 80.1 45 73.3
Eucgr.B01968 Eucalyptus grandis HOM05D000001 ORTHO05D009286 8.9e-14 79.7 41 82.9
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 8.9e-14 79.7 41 80.5
Eucgr.B01873 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.2e-13 79.3 39 87.2
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 1.2e-13 79.3 41 80.5
AL3G15790 Arabidopsis lyrata HOM05D000001 ORTHO05D009286 1.5e-13 79.0 45 75.6
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 1.5e-13 79.0 41 82.9
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 1.5e-13 79.0 41 80.5
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 1.5e-13 79.0 45 75.6
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 2.0e-13 78.6 45 73.3
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 2.0e-13 78.6 45 73.3
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 2.0e-13 78.6 45 73.3
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 2.6e-13 78.2 41 80.5
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 2.6e-13 78.2 41 80.5
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 2.6e-13 78.2 44 72.7
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.4e-13 77.8 45 73.3
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 3.4e-13 77.8 41 80.5
PGR083G0578 Punica granatum HOM05D000001 ORTHO05D009286 3.4e-13 77.8 41 85.4
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 4.4e-13 77.4 41 78.0
HanXRQChr03g0071681 Helianthus annuus HOM05D000001 ORTHO05D009286 4.4e-13 77.4 41 85.4
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 4.4e-13 77.4 41 78.0
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 4.4e-13 77.4 44 72.7
Nitab4.5_0003156g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009286 4.4e-13 77.4 44 72.7
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 4.4e-13 77.4 44 72.7
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 7.5e-13 76.6 41 80.5
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 9.8e-13 76.3 44 72.7
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 1.7e-12 75.5 41 75.6
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 1.7e-12 75.5 41 82.9
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 2.2e-12 75.1 41 78.0
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 2.2e-12 75.1 41 75.6
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 2.2e-12 75.1 41 80.5
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 2.9e-12 74.7 41 78.0
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 2.9e-12 74.7 47 68.1
arahy.Tifrunner.gnm1.ann1.LJ09F6 Arachis hypogaea HOM05D000001 ORTHO05D009286 4.9e-12 73.9 40 82.5
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 4.9e-12 73.9 40 82.5
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 4.9e-12 73.9 41 78.0
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 4.9e-12 73.9 41 78.0
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 4.9e-12 73.9 41 75.6
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 4.9e-12 73.9 51 68.6
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 4.9e-12 73.9 41 75.6
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 4.9e-12 73.9 45 71.1
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 6.4e-12 73.6 41 75.6
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 6.4e-12 73.6 41 75.6
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 8.3e-12 73.2 41 73.2
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 8.3e-12 73.2 41 73.2
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 8.3e-12 73.2 41 73.2
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 8.3e-12 73.2 41 73.2
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 8.3e-12 73.2 41 75.6
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 8.3e-12 73.2 41 73.2
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 1.1e-11 72.8 41 75.6
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 1.1e-11 72.8 41 75.6
Solyc01g099260.3 Solanum lycopersicum HOM05D000001 ORTHO05D009286 1.1e-11 72.8 44 70.5
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 1.4e-11 72.4 45 66.7
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 1.4e-11 72.4 45 66.7
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 1.4e-11 72.4 41 70.7
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 1.9e-11 72.0 41 73.2
BcaC05g30155 Brassica carinata HOM05D000001 ORTHO05D009286 2.4e-11 71.6 43 69.8
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 2.4e-11 71.6 40 75.0
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 3.2e-11 71.2 41 75.6
Sopen01g042810 Solanum pennellii HOM05D000001 ORTHO05D009286 4.1e-11 70.9 44 68.2
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 4.1e-11 70.9 40 75.0
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 9.2e-11 69.7 41 70.7
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 9.2e-11 69.7 41 73.2
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 1.6e-10 68.9 40 75.0
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 2.7e-10 68.2 41 73.2
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 2.7e-10 68.2 41 73.2
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 3.5e-10 67.8 41 73.2
Glyma.03G237900 Glycine max HOM05D000001 ORTHO05D009286 1.0e-09 66.2 38 73.7
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 1.0e-09 66.2 38 76.3
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 2.3e-09 65.1 44 65.9
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 2.3e-09 65.1 38 71.1
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.3e-09 65.1 38 73.7
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 3.9e-09 64.3 41 68.3
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 8.6e-09 63.2 38 68.4
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 1.5e-08 62.4 28 89.3
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 1.5e-08 62.4 41 63.4
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 3.3e-08 61.2 28 85.7
A05p32000 Brassica napus HOM05D000001 ORTHO05D009286 5.6e-08 60.5 36 69.4
BraA05t22031Z Brassica rapa HOM05D000001 ORTHO05D009286 5.6e-08 60.5 36 69.4
vmacro05020 Vaccinium macrocarpon HOM05D000001 ORTHO05D009286 1.2e-07 59.3 27 85.2
ATR0030G028 Amborella trichopoda HOM05D000001 ORTHO05D009286 1.6e-07 58.9 41 61.0
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 3.6e-07 57.8 28 71.4
QL03p006686 Quercus lobata HOM05D000001 ORTHO05D009286 2.3e-06 55.1 28 78.6
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 3.1e-06 54.7 51 49.0
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 4.0e-06 54.3 25 84.0
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 4.0e-06 54.3 45 51.1


User provided reference genes

Program Settings