Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 0.0e+00 1150.2 568 100.0
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.7e-223 778.9 540 72.6
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.3e-220 770.0 540 70.7
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.3e-220 770.0 541 70.1
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.8e-219 766.1 532 71.8
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 3.6e-215 751.9 525 71.0
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.0e-213 746.1 518 70.7
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 1.7e-212 743.0 542 69.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 6.3e-212 741.1 545 68.1
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 6.3e-212 741.1 545 67.5
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 6.3e-212 741.1 541 66.9
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 1.1e-211 740.3 541 67.8
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.8e-211 739.6 542 67.9
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 3.1e-211 738.8 540 68.0
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 4.1e-211 738.4 538 69.0
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.3e-211 738.0 546 66.7
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.2e-210 736.9 546 67.0
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.2e-210 736.9 549 67.2
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 2.0e-210 736.1 549 67.6
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.9e-210 734.6 546 66.5
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 5.9e-210 734.6 541 67.5
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.9e-209 732.3 541 68.2
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 3.8e-209 731.9 546 66.5
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 6.5e-209 731.1 541 67.7
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.1e-208 730.3 545 67.0
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 3.2e-208 728.8 541 66.2
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.7e-207 724.9 541 67.1
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 8.0e-207 724.2 522 68.0
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.5e-205 719.9 542 65.9
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 9.7e-205 717.2 547 64.7
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 8.2e-204 714.1 547 65.8
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.4e-203 713.4 540 65.6
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 3.1e-203 712.2 540 65.2
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 4.1e-203 711.8 519 68.0
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 5.3e-203 711.4 538 63.2
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 7.0e-203 711.1 534 66.1
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 2.7e-202 709.1 541 65.6
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 3.5e-202 708.8 551 64.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 4.5e-202 708.4 540 65.9
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 5.9e-202 708.0 538 63.9
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 7.7e-202 707.6 549 64.8
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.0e-201 707.2 550 65.1
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 6.5e-201 704.5 543 65.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 6.5e-201 704.5 504 68.5
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 1.9e-200 703.0 519 67.2
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.9e-200 703.0 555 64.0
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.2e-199 700.3 485 72.8
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 2.1e-199 699.5 533 65.5
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 6.1e-199 698.0 524 65.6
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.0e-198 697.2 521 67.4
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.4e-198 696.8 533 66.4
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.4e-198 696.8 523 66.7
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 2.3e-198 696.0 522 64.8
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 3.0e-198 695.7 541 64.3
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 6.8e-198 694.5 529 64.5
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 8.8e-198 694.1 542 62.9
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.4e-197 692.2 504 68.3
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.4e-197 692.2 504 68.3
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 3.4e-197 692.2 543 64.6
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.3e-196 690.3 504 68.3
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.4e-195 686.0 514 65.8
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 1.2e-194 683.7 516 64.7
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.9e-193 679.1 504 67.3
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 6.6e-193 677.9 499 67.1
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.9e-192 676.4 524 63.9
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 7.2e-192 674.5 507 65.3
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 9.5e-192 674.1 522 63.2
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 9.5e-192 674.1 511 65.6
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.2e-191 673.7 522 62.8
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.2e-189 667.2 546 60.8
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 2.2e-188 662.9 513 63.5
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 3.7e-188 662.1 411 79.6
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 4.1e-187 658.7 490 67.3
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 2.0e-186 656.4 516 62.2
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 5.0e-185 651.7 510 62.2
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 5.0e-185 651.7 508 62.6
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 5.0e-185 651.7 511 62.2
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.1e-184 650.6 510 62.2
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.5e-184 650.2 508 62.8
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.5e-184 650.2 508 62.8
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.3e-184 647.9 510 62.0
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 7.3e-184 647.9 509 62.5
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 3.6e-183 645.6 514 63.0
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.8e-182 643.3 529 60.7
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 7.0e-179 631.3 450 67.1
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 3.0e-177 625.9 517 60.2
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 3.2e-171 605.9 513 58.9
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 4.1e-171 605.5 406 74.4
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 7.0e-171 604.7 471 63.5
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 2.1e-167 593.2 609 51.4
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 4.0e-166 589.0 532 56.8
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.2e-162 577.4 518 56.4
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 8.1e-159 564.7 373 73.2
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 8.9e-158 561.2 505 57.6
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 4.9e-156 555.4 354 74.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.4e-155 553.9 411 67.4
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.2e-151 540.8 369 73.2
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 4.0e-150 535.8 354 74.0
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.3e-145 520.8 525 49.3
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 1.1e-144 517.7 536 49.8
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.4e-140 501.9 523 49.3
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.4e-140 501.9 523 49.3
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.3e-136 489.6 399 61.4
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 3.7e-135 486.1 360 67.2
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 7.6e-133 478.4 431 56.4
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 9.6e-128 461.5 532 51.3
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.1e-126 458.0 479 53.9
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.2e-117 427.9 541 46.4
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 8.5e-116 421.8 424 53.8
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 3.3e-112 409.8 491 47.0
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 3.3e-104 383.3 260 71.5
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 4.4e-80 303.1 483 36.9
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 5.9e-77 292.7 238 63.9
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.8e-64 248.8 213 58.2
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 4.0e-57 226.9 183 63.4
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 4.6e-45 186.8 166 54.8
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.0e-44 185.7 142 63.4
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-43 181.4 176 54.5
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 2.8e-42 177.6 214 46.3
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 8.4e-39 166.0 156 55.8
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 8.4e-39 166.0 117 65.8
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.9e-38 164.9 494 28.9
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 4.4e-32 143.7 100 63.0
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.3e-31 142.1 146 55.5
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 7.3e-27 126.3 107 57.0
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 7.3e-27 126.3 107 57.0
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 7.3e-27 126.3 107 57.0
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.9e-25 119.8 80 66.2
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.0e-24 118.2 77 70.1
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.9e-20 104.0 64 75.0
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.3e-19 100.9 77 62.3
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 7.4e-11 73.2 59 59.3
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 4.1e-09 67.4 51 56.9
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 4.5e-08 63.9 207 27.1
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 1.3e-07 62.4 126 32.5
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 1.7e-07 62.0 216 27.8
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.7e-07 62.0 221 30.3
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 1.7e-07 62.0 227 27.3
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 2.2e-07 61.6 169 27.8
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.2e-07 61.6 211 29.4
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 5.0e-07 60.5 123 30.9
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 6.5e-07 60.1 216 27.3
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 6.5e-07 60.1 223 25.6
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 8.4e-07 59.7 143 28.7
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 1.1e-06 59.3 124 32.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.1e-06 59.3 150 29.3
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.4e-06 58.9 212 27.8
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.4e-06 58.9 209 26.3
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 1.4e-06 58.9 120 32.5
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.9e-06 58.5 177 27.7
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.9e-06 58.5 216 26.4
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 1.9e-06 58.5 263 26.6
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 2.5e-06 58.2 169 26.0
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 2.5e-06 58.2 254 23.2
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 3.2e-06 57.8 184 25.5
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 4.2e-06 57.4 171 26.3
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 4.2e-06 57.4 171 26.9
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 4.2e-06 57.4 171 26.9
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 4.2e-06 57.4 116 30.2
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 4.2e-06 57.4 258 23.6
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 4.2e-06 57.4 177 26.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 4.2e-06 57.4 270 26.7
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 7.1e-06 56.6 166 26.5
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 7.1e-06 56.6 166 26.5
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 9.3e-06 56.2 173 27.7
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 9.3e-06 56.2 111 32.4
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 9.3e-06 56.2 213 28.6
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 9.3e-06 56.2 271 25.8
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 9.3e-06 56.2 118 29.7


User provided reference genes

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