Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 0.0e+00 1391.7 702 100.0
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 0.0e+00 1104.0 707 79.9
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 0.0e+00 1104.0 707 79.9
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 0.0e+00 1081.2 679 80.9
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 9.6e-312 1072.8 691 78.4
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 4.3e-311 1070.8 704 77.6
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 3.1e-309 1064.7 705 78.0
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 3.0e-304 1048.1 708 76.1
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 1.2e-300 1036.2 706 75.4
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 2.4e-298 1028.5 713 74.5
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 4.2e-298 1027.7 710 75.6
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 1.9e-295 1018.8 704 75.7
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 9.6e-295 1016.5 687 76.4
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 1.6e-294 1015.8 678 76.4
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 8.1e-294 1013.4 683 75.3
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 2.6e-292 1008.4 698 75.4
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 9.9e-292 1006.5 708 72.3
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.2e-291 1005.4 667 76.2
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 3.8e-291 1004.6 689 73.9
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 4.9e-291 1004.2 706 72.4
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 6.4e-291 1003.8 701 74.2
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 1.5e-287 992.6 708 74.2
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 3.3e-287 991.5 697 72.2
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 1.6e-286 989.2 700 72.9
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 2.1e-286 988.8 678 74.0
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 2.1e-286 988.8 693 73.4
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 2.1e-286 988.8 711 72.4
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 2.1e-286 988.8 712 73.2
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 3.7e-286 988.0 700 73.1
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 6.2e-286 987.3 678 74.0
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 1.8e-285 985.7 702 73.1
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 1.8e-285 985.7 703 73.3
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 3.1e-285 984.9 663 74.7
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 9.0e-285 983.4 684 73.2
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.2e-284 983.0 688 73.4
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 1.2e-284 983.0 704 72.3
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 1.0e-283 979.9 707 72.0
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 3.8e-283 978.0 703 71.3
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 1.2e-281 973.0 728 71.4
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 1.2e-281 973.0 663 74.2
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 2.1e-281 972.2 663 73.9
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 3.5e-281 971.5 661 74.0
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 1.3e-280 969.5 721 69.5
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 3.0e-280 968.4 700 71.6
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 5.1e-280 967.6 745 67.8
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 6.7e-280 967.2 718 69.9
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 6.7e-280 967.2 670 74.3
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 8.7e-280 966.8 711 70.5
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 1.4e-277 959.5 704 70.5
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 4.1e-277 958.0 715 69.8
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 9.0e-277 956.8 693 71.3
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 2.0e-276 955.7 708 70.2
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 3.4e-276 954.9 711 70.3
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 3.4e-276 954.9 685 71.4
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 1.0e-275 953.4 715 69.4
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 1.7e-275 952.6 675 72.9
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 1.1e-274 949.9 667 71.7
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 1.9e-274 949.1 720 69.3
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 3.2e-274 948.3 706 69.8
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 3.2e-274 948.3 668 71.3
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 5.5e-274 947.6 703 69.8
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 9.3e-274 946.8 756 67.1
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 1.2e-273 946.4 706 69.7
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 4.6e-273 944.5 691 70.5
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 6.7e-272 940.6 712 69.8
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 3.3e-271 938.3 696 70.4
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 4.8e-270 934.5 679 69.5
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 1.1e-269 933.3 696 69.0
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 1.4e-269 932.9 701 69.3
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 2.4e-269 932.2 698 68.9
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 6.9e-269 930.6 602 78.9
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 2.7e-265 918.7 706 68.6
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.8e-262 907.9 653 70.9
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 2.2e-259 899.0 616 74.8
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 1.4e-258 896.3 684 67.5
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 4.2e-258 894.8 691 67.0
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 1.8e-256 889.4 697 67.6
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 4.4e-255 884.8 695 68.5
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 5.7e-255 884.4 675 69.3
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 5.7e-255 884.4 708 66.7
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 2.2e-251 872.5 729 64.1
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 1.7e-246 856.3 595 71.8
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 6.3e-246 854.4 597 72.9
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 7.0e-245 850.9 691 63.5
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 6.8e-240 834.3 645 66.7
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 5.7e-239 831.2 573 74.0
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 1.4e-237 826.6 620 68.5
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 2.0e-228 796.2 603 67.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.3e-227 793.5 630 66.0
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 2.3e-227 792.7 569 70.7
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 2.4e-205 719.5 1250 38.6
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 6.2e-193 678.3 441 77.8
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 2.8e-185 652.9 619 56.7
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 1.5e-183 647.1 609 56.3
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 2.4e-181 639.8 652 52.5
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 5.4e-181 638.6 631 54.5
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 6.2e-169 598.6 400 75.8
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 6.7e-163 578.6 416 72.4
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 8.5e-158 561.6 401 68.8
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 1.0e-134 485.0 332 73.2
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 4.2e-133 479.6 726 41.9
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 4.7e-132 476.1 617 45.5
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 1.2e-130 471.5 474 52.3
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 5.4e-112 409.5 273 74.0
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 7.8e-103 379.0 225 84.9
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 2.3e-102 377.5 461 50.3
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 5.6e-101 372.9 311 64.0
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 2.0e-98 364.4 310 63.2
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 1.3e-89 335.1 285 64.9
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 1.9e-85 321.2 203 78.8
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 9.5e-85 318.9 203 78.8
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 1.8e-83 314.7 650 35.8
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 4.2e-80 303.5 292 58.2
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 8.1e-60 236.1 155 74.8
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.8e-51 208.4 146 71.9
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 3.7e-44 184.1 144 66.0
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 3.8e-41 174.1 203 52.7
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.2e-33 148.3 103 68.9
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 9.4e-32 142.9 231 40.3
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 6.1e-31 140.2 158 51.3
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.0e-25 122.9 115 60.0
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 2.3e-22 111.7 96 61.5
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.1e-19 102.8 113 46.0
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 5.3e-19 100.5 68 72.1
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 1.6e-15 89.0 53 75.5
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 1.6e-10 72.4 69 53.6


User provided reference genes

Program Settings