Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 6.8e-273 943.3 465 100.0
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 7.7e-216 753.8 465 80.0
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 7.7e-216 753.8 465 80.0
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.1e-211 740.0 464 78.7
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 1.5e-211 739.6 465 77.6
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 2.8e-210 735.3 465 77.6
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 2.4e-209 732.3 465 77.6
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 7.0e-209 730.7 465 77.4
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 3.5e-208 728.4 465 76.8
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 5.9e-208 727.6 465 77.8
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 3.8e-207 724.9 465 76.8
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.0e-207 724.5 465 75.9
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 5.0e-207 724.5 468 75.9
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 1.5e-206 723.0 465 77.2
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 3.2e-206 721.8 462 76.2
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 4.2e-206 721.5 465 76.3
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 9.4e-206 720.3 465 77.0
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 2.7e-205 718.8 463 75.6
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 1.4e-204 716.5 466 76.0
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 3.0e-204 715.3 465 75.5
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 4.0e-204 714.9 464 75.0
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 8.8e-204 713.8 463 74.7
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 1.5e-203 713.0 465 75.7
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 4.4e-203 711.4 469 75.1
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 4.4e-203 711.4 467 74.7
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 7.5e-203 710.7 465 75.1
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 7.5e-203 710.7 465 75.1
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 3.7e-202 708.4 465 74.8
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 4.8e-202 708.0 465 75.5
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 4.8e-202 708.0 465 74.2
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 6.3e-202 707.6 465 75.3
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 8.3e-202 707.2 465 75.7
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 8.3e-202 707.2 465 74.4
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 2.4e-201 705.7 465 74.6
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 5.4e-201 704.5 465 75.1
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 5.4e-201 704.5 465 74.6
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 9.1e-201 703.7 465 74.4
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 1.2e-200 703.4 465 74.4
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 1.6e-200 703.0 465 73.8
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 2.0e-200 702.6 470 73.4
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 2.0e-200 702.6 465 74.8
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 2.7e-200 702.2 479 73.7
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 5.9e-200 701.0 465 74.2
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.0e-199 700.3 472 73.5
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 1.3e-199 699.9 465 74.4
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 3.8e-199 698.4 465 74.0
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 3.8e-199 698.4 468 73.1
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 5.0e-199 698.0 490 71.0
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 8.5e-199 697.2 465 75.1
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 1.5e-198 696.4 466 73.6
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.2e-197 693.3 511 69.3
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 2.1e-197 692.6 477 73.4
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 4.7e-197 691.4 465 74.4
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 6.1e-197 691.0 465 74.0
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 1.4e-196 689.9 577 63.4
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 1.8e-196 689.5 477 73.2
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 2.3e-196 689.1 477 73.0
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 4.0e-196 688.3 463 73.0
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 5.2e-196 688.0 489 71.2
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 5.2e-196 688.0 465 74.0
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 6.8e-196 687.6 465 74.0
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 8.8e-196 687.2 477 73.0
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 3.4e-195 685.3 474 71.5
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 7.5e-195 684.1 472 73.1
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 8.3e-194 680.6 465 73.1
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.4e-193 679.9 463 73.0
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 1.7e-191 672.9 465 71.8
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 6.6e-191 671.0 466 73.2
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 5.5e-190 667.9 412 79.4
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 7.2e-190 667.5 410 79.0
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 2.1e-189 666.0 465 71.8
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 6.1e-189 664.5 465 71.8
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 1.8e-188 662.9 465 71.8
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 5.2e-188 661.4 463 69.8
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 6.8e-188 661.0 478 69.5
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 3.4e-187 658.7 465 70.5
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 7.5e-187 657.5 463 70.8
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 9.8e-187 657.1 487 68.0
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 3.7e-186 655.2 465 71.4
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 1.1e-185 653.7 466 69.7
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 4.1e-185 651.7 431 75.2
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.7e-184 649.0 425 75.5
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 7.8e-184 647.5 465 70.8
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 7.8e-184 647.5 465 69.9
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 2.6e-179 632.5 468 69.7
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.4e-177 626.7 469 68.7
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 3.9e-175 618.6 466 67.4
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 1.9e-169 599.7 425 69.9
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 2.4e-169 599.4 425 70.4
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 9.2e-169 597.4 373 78.0
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 1.6e-168 596.7 467 62.5
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 4.6e-168 595.1 428 70.3
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 1.5e-166 590.1 355 79.4
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 1.6e-165 586.6 534 56.4
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 7.6e-163 577.8 472 58.9
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 3.6e-157 558.9 360 76.4
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 5.1e-151 538.5 455 63.7
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 4.8e-149 531.9 327 81.0
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 2.4e-145 519.6 349 73.4
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 7.6e-139 498.0 348 70.7
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 1.6e-136 490.3 456 56.6
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 5.8e-131 471.9 339 65.8
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 3.8e-130 469.2 369 65.6
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.6e-125 453.8 267 80.1
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 4.1e-108 396.0 249 78.7
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 3.9e-103 379.4 260 71.5
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.4e-84 317.0 210 73.8
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 5.9e-83 312.4 203 77.3
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.0e-79 299.7 175 80.0
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 3.6e-72 276.6 458 36.5
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 5.8e-62 242.7 423 35.5
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.5e-57 228.0 187 64.7
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 7.1e-52 209.1 121 79.3
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 1.1e-47 195.3 166 61.4
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 2.3e-42 177.6 119 69.7
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 7.3e-33 146.0 104 67.3
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 1.9e-25 121.3 82 73.2
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 8.1e-24 115.9 82 70.7
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 5.8e-22 109.8 285 31.6
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 1.3e-21 108.6 78 71.8
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 2.2e-21 107.8 304 28.3
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 1.9e-20 104.8 305 29.2
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 6.0e-19 99.8 89 53.9
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 1.3e-18 98.6 66 75.8
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 1.8e-15 88.2 72 68.1
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 1.0e-10 72.4 65 63.1
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 3.3e-09 67.4 41 80.5
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 7.4e-09 66.2 41 75.6
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.1e-07 60.5 27 92.6
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 9.0e-07 59.3 61 55.7


User provided reference genes

Program Settings