Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 6.8e-148 527.3 272 100.0
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 5.9e-91 338.2 276 67.4
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 8.5e-90 334.3 281 66.9
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.2e-88 330.5 267 67.4
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 4.7e-88 328.6 248 70.2
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.4e-87 327.0 272 65.8
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 4.0e-87 325.5 273 66.7
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 4.4e-86 322.0 242 69.8
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 3.1e-84 315.8 276 63.8
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 2.9e-82 309.3 278 61.2
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 6.5e-82 308.1 276 62.7
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 1.5e-81 307.0 278 61.2
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 1.9e-81 306.6 271 60.5
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 1.2e-80 303.9 262 62.2
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 2.7e-80 302.8 267 61.0
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 2.7e-80 302.8 263 62.7
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 2.7e-80 302.8 270 63.0
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 4.7e-80 302.0 272 61.4
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 8.0e-80 301.2 273 62.3
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 4.0e-79 298.9 268 61.6
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 8.8e-79 297.7 282 59.6
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 1.2e-78 297.4 276 59.1
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 4.4e-78 295.4 266 60.2
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 4.4e-78 295.4 262 61.1
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 4.4e-78 295.4 278 60.4
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 7.5e-78 294.7 278 59.4
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 9.8e-78 294.3 250 63.2
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 9.8e-78 294.3 277 59.9
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 9.8e-78 294.3 270 60.7
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 1.7e-77 293.5 261 62.8
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 2.2e-77 293.1 271 60.5
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 2.2e-77 293.1 276 59.4
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 2.2e-77 293.1 270 61.1
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 4.8e-77 292.0 283 58.0
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 4.8e-77 292.0 279 59.1
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 6.3e-77 291.6 271 60.1
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 6.3e-77 291.6 266 60.5
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 1.1e-76 290.8 267 60.3
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 1.1e-76 290.8 250 62.8
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 1.4e-76 290.4 273 59.3
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 1.4e-76 290.4 241 65.6
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 5.4e-76 288.5 271 60.1
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 5.4e-76 288.5 269 61.0
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 7.0e-76 288.1 272 57.7
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 7.0e-76 288.1 281 58.4
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 2.0e-75 286.6 271 59.4
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.5e-75 285.8 272 58.5
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 5.9e-75 285.0 272 57.4
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 7.7e-75 284.6 267 61.4
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.7e-74 283.5 270 58.5
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 1.7e-74 283.5 270 58.5
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 2.2e-74 283.1 271 58.3
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 2.2e-74 283.1 207 68.1
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 2.9e-74 282.7 280 57.5
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 3.8e-74 282.3 265 58.5
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 3.8e-74 282.3 277 57.8
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.0e-74 282.0 295 54.2
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 8.5e-74 281.2 265 58.1
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 8.5e-74 281.2 281 56.2
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 1.1e-73 280.8 276 56.9
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 2.5e-73 279.6 276 58.0
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 4.2e-73 278.9 271 56.8
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 2.1e-72 276.6 253 57.7
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 2.7e-72 276.2 262 57.6
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 1.4e-71 273.9 278 57.2
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 8.8e-71 271.2 273 57.9
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 1.2e-70 270.8 279 55.9
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 2.0e-70 270.0 278 55.8
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 4.4e-70 268.9 190 70.5
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 5.7e-70 268.5 270 57.4
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 5.7e-70 268.5 255 58.4
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 7.5e-70 268.1 267 56.9
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 2.2e-69 266.5 206 65.5
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 2.8e-69 266.2 271 55.0
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 2.8e-69 266.2 270 55.6
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.7e-69 265.8 321 50.8
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 4.9e-69 265.4 273 53.8
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 8.3e-69 264.6 246 57.7
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 7.0e-68 261.5 255 55.7
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 1.2e-67 260.8 255 54.9
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 2.7e-67 259.6 269 55.8
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 3.5e-67 259.2 264 54.9
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 3.5e-67 259.2 283 50.9
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 1.7e-66 256.9 285 55.4
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 1.7e-66 256.9 285 55.4
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 5.0e-66 255.4 283 55.5
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.5e-65 253.8 287 52.6
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 5.6e-65 251.9 260 54.2
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 5.6e-65 251.9 261 54.0
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 1.6e-64 250.4 256 53.5
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 2.1e-64 250.0 207 58.9
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 5.7e-62 241.9 255 53.7
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 6.4e-61 238.4 239 55.2
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 1.4e-60 237.3 142 81.0
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 4.1e-60 235.7 251 51.8
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 9.2e-60 234.6 237 54.9
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 3.5e-59 232.6 277 49.5
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 3.5e-59 232.6 142 81.0
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 1.0e-58 231.1 271 50.9
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 1.7e-58 230.3 243 50.6
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 3.6e-56 222.6 304 47.7
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 1.3e-53 214.2 262 52.3
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 1.5e-49 200.7 203 53.7
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 4.0e-47 192.6 134 67.9
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 2.7e-43 179.9 196 53.6
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 2.3e-42 176.8 201 52.2
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 1.8e-39 167.2 243 37.4
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 4.0e-39 166.0 261 43.7
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 2.6e-38 163.3 95 81.1
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 9.9e-38 161.4 213 40.4
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 7.8e-35 151.8 173 58.4
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.0e-34 151.4 258 34.9
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 1.3e-34 151.0 185 53.0
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 2.5e-33 146.7 186 49.5
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 1.1e-31 141.4 236 36.9
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 1.5e-25 120.9 96 60.4
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.3e-23 112.5 166 45.2
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 3.6e-16 89.7 96 51.0
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 1.4e-12 77.8 132 31.8
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-10 70.1 235 26.0
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 1.5e-09 67.8 128 30.5
Dinv22904 Davidia involucrata HOM05D006710 ORTHO05D008353 3.4e-06 56.6 62 45.2
HPP92_013649 Vanilla planifolia HOM05D006710 ORTHO05D008353 1.0e-05 55.1 35 68.6


User provided reference genes

Program Settings