Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 2.1e-106 389.0 192 100.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.8e-85 317.8 174 86.8
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 1.4e-83 313.2 176 84.7
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 7.1e-83 310.8 175 84.0
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.2e-82 310.1 175 85.1
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 3.5e-82 308.5 175 83.4
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 1.8e-81 306.2 176 83.5
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 3.0e-81 305.4 176 84.1
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 3.0e-81 305.4 177 81.9
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 8.7e-81 303.9 180 82.2
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.9e-80 302.8 191 78.5
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 3.3e-80 302.0 175 83.4
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 5.6e-80 301.2 175 81.7
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.6e-80 301.2 182 81.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 9.6e-80 300.4 176 80.7
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.3e-79 300.1 175 80.6
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.6e-79 299.7 175 81.7
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.8e-79 298.9 175 81.7
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.8e-79 298.1 175 81.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 6.2e-79 297.7 175 81.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 6.2e-79 297.7 177 79.7
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 6.2e-79 297.7 175 81.1
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 8.1e-79 297.4 175 78.3
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.4e-78 296.6 174 79.9
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.4e-78 296.6 174 79.9
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.8e-78 296.2 174 80.5
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 3.1e-78 295.4 174 81.0
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 5.3e-78 294.7 173 81.5
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 6.9e-78 294.3 175 80.0
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 6.9e-78 294.3 175 80.0
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 9.0e-78 293.9 175 80.0
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 9.0e-78 293.9 175 80.0
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.2e-77 293.5 175 80.6
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.2e-77 293.5 173 81.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.5e-77 293.1 173 81.5
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.5e-77 293.1 176 80.7
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.5e-77 293.1 175 78.9
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 2.6e-77 292.4 175 78.3
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.4e-77 292.0 174 79.3
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 4.5e-77 291.6 181 77.3
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.3e-76 290.0 174 78.7
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.3e-76 290.0 176 79.0
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 1.3e-76 290.0 176 79.5
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 2.2e-76 289.3 176 78.4
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.9e-76 288.9 175 78.3
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 3.8e-76 288.5 175 78.9
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 4.9e-76 288.1 175 77.7
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 4.9e-76 288.1 175 76.0
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 8.4e-76 287.3 189 74.6
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 8.4e-76 287.3 176 78.4
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-75 286.2 189 74.1
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.4e-75 285.8 175 77.7
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 3.2e-75 285.4 174 78.2
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 4.2e-75 285.0 176 73.9
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.6e-74 283.1 176 76.7
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.6e-74 283.1 175 76.6
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 6.0e-74 281.2 176 75.6
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.9e-74 280.8 175 77.7
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 7.9e-74 280.8 241 61.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 5.1e-73 278.1 173 77.5
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 5.1e-73 278.1 175 77.1
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.7e-73 277.7 174 76.4
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.1e-72 276.9 175 75.4
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.9e-72 276.2 176 73.9
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.3e-72 275.0 189 70.9
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 7.4e-72 274.2 177 74.6
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 9.6e-72 273.9 165 80.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-71 273.5 189 70.4
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 1.3e-71 273.5 176 69.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.8e-71 272.3 175 76.0
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.7e-71 271.9 194 69.6
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 4.0e-70 268.5 217 64.5
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 6.9e-70 267.7 200 66.5
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 5.8e-69 264.6 176 70.5
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.0e-65 253.8 173 71.1
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 3.9e-65 251.9 172 72.7
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.5e-64 250.0 175 70.3
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.3e-64 248.8 181 68.5
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.3e-63 246.9 175 68.0
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.8e-63 245.0 149 79.2
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.1e-62 243.8 139 87.8
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 4.5e-61 238.4 148 77.7
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 1.3e-60 236.9 168 70.8
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 8.5e-60 234.2 147 78.9
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.1e-56 223.8 149 74.5
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.3e-55 220.3 128 82.0
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 8.2e-55 217.6 205 57.6
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 2.6e-53 212.6 176 62.5
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 7.9e-50 201.1 274 44.5
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 3.7e-47 192.2 178 50.6
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.1e-46 190.7 155 64.5
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.0e-45 186.4 177 47.5
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 5.9e-45 184.9 177 55.4
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.3e-44 183.7 108 81.5
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.4e-43 180.3 131 68.7
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.9e-43 179.9 108 82.4
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 5.5e-43 178.3 186 55.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.2e-42 177.2 175 48.0
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 8.8e-41 171.0 105 79.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.3e-39 167.2 105 77.1
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.4e-38 162.9 178 46.6
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 6.1e-34 148.3 133 63.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.3e-31 138.3 150 53.3
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 9.1e-30 134.4 70 82.9
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.2e-28 129.8 99 66.7
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.0e-25 120.9 71 81.7
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.3e-25 119.8 69 73.9
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 4.5e-21 105.5 57 87.7
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.3e-20 104.0 115 49.6
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 2.3e-20 103.2 113 55.8
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 2.3e-20 103.2 110 54.5
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.1e-19 100.9 170 34.1
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.3e-12 77.4 53 73.6
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.6e-10 70.5 51 58.8
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 2.1e-10 70.1 168 31.0
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 8.0e-10 68.2 50 64.0
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.4e-09 67.4 38 81.6
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.3e-07 60.8 29 79.3
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 2.2e-07 60.1 50 54.0
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.4e-06 56.6 30 70.0
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 3.2e-06 56.2 55 45.5
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 4.1e-06 55.8 28 75.0
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 7.0e-06 55.1 29 72.4


User provided reference genes

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