Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.5e-121 439.5 212 100.0
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.3e-82 310.1 164 91.5
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 3.6e-80 302.0 164 89.0
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.1e-79 300.4 164 87.8
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.8e-79 299.7 162 89.5
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.1e-79 298.9 164 88.4
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.1e-79 298.9 164 88.4
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 3.1e-79 298.9 164 88.4
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 3.1e-79 298.9 164 88.4
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 3.1e-79 298.9 164 88.4
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 6.9e-79 297.7 164 87.8
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.5e-78 296.6 162 88.3
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.5e-78 296.6 164 87.8
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.6e-78 295.8 164 85.4
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 5.8e-78 294.7 164 87.8
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 5.8e-78 294.7 164 87.8
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 9.9e-78 293.9 164 86.0
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.7e-77 293.1 164 85.4
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.2e-77 292.7 160 89.4
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 2.9e-77 292.4 164 85.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 3.8e-77 292.0 169 84.0
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.8e-77 292.0 164 84.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.1e-76 290.4 164 85.4
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.9e-76 289.7 160 87.5
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.4e-76 289.3 165 84.8
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 5.4e-76 288.1 164 85.4
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 7.1e-76 287.7 164 85.4
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 9.3e-76 287.3 164 84.8
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.2e-75 287.0 167 86.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.6e-75 286.6 164 83.5
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 2.1e-75 286.2 161 89.4
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 2.1e-75 286.2 164 84.1
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.7e-75 285.8 164 84.8
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.5e-75 285.4 164 84.1
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 3.5e-75 285.4 164 82.9
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 4.6e-75 285.0 164 83.5
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 6.0e-75 284.6 164 86.0
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 7.9e-75 284.3 164 82.9
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 7.9e-75 284.3 164 84.1
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.3e-74 283.5 164 84.1
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.3e-74 283.5 164 82.3
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.3e-74 283.5 166 80.7
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.8e-74 283.1 160 85.6
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 2.3e-74 282.7 165 83.0
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.3e-74 282.7 164 84.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 6.7e-74 281.2 164 83.5
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 6.7e-74 281.2 165 81.2
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 8.7e-74 280.8 162 82.1
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.1e-73 280.4 165 82.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.5e-73 280.0 169 82.2
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.5e-73 280.0 164 82.9
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.9e-73 279.6 164 82.9
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.9e-73 279.6 164 82.9
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.9e-73 279.6 166 79.5
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.3e-73 278.9 164 81.1
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 4.3e-73 278.5 160 85.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 4.3e-73 278.5 163 83.4
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.4e-73 277.7 161 84.5
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.3e-72 276.9 164 81.1
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.6e-72 276.6 164 79.9
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.1e-72 276.2 164 81.7
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 4.8e-72 275.0 164 80.5
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.2e-72 274.6 165 81.2
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 8.1e-72 274.2 164 82.9
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 8.1e-72 274.2 164 80.5
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.1e-71 273.9 148 90.5
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.1e-71 273.9 164 80.5
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.4e-71 273.5 164 82.3
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.8e-71 273.1 155 84.5
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.8e-71 273.1 164 82.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.1e-71 272.3 164 81.7
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 4.0e-71 271.9 178 74.2
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 4.0e-71 271.9 178 74.2
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.0e-71 271.9 164 80.5
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 5.3e-71 271.6 162 79.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.9e-71 271.2 164 78.7
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 9.0e-71 270.8 162 79.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-70 270.4 171 76.6
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.2e-70 270.4 164 79.3
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.5e-70 270.0 164 78.0
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.5e-70 270.0 171 80.1
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.0e-70 269.6 164 78.0
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 2.6e-70 269.2 164 79.9
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.4e-70 268.9 164 77.4
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.4e-70 268.9 164 77.4
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 3.4e-70 268.9 160 79.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 4.5e-70 268.5 164 81.1
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.8e-70 268.1 170 77.1
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 5.8e-70 268.1 164 77.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.6e-70 267.7 165 77.0
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.0e-69 267.3 164 76.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 1.7e-69 266.5 164 76.8
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-69 266.5 164 76.8
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-69 266.5 164 76.8
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.8e-69 265.4 164 76.2
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 4.9e-69 265.0 160 80.6
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 8.4e-69 264.2 153 83.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 8.4e-69 264.2 164 75.6
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.5e-68 262.7 160 78.1
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 7.1e-68 261.2 216 64.4
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.1e-68 261.2 160 77.5
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.2e-67 260.4 159 78.0
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.2e-67 260.4 165 73.9
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.6e-67 260.0 159 77.4
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.6e-67 260.0 159 77.4
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 1.6e-67 260.0 164 76.2
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.6e-67 260.0 165 77.0
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 3.5e-67 258.8 161 76.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 6.0e-67 258.1 162 80.2
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.0e-66 257.3 164 74.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.3e-66 256.9 164 74.4
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.3e-66 256.9 164 74.4
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.8e-66 256.5 164 76.2
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.8e-66 256.5 165 75.2
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.7e-66 254.2 164 76.2
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.9e-65 253.1 164 74.4
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.3e-65 252.3 171 71.3
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 5.7e-65 251.5 164 73.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 9.6e-65 250.8 164 72.0
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.3e-64 250.4 164 72.6
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 4.8e-64 248.4 161 73.9
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 6.2e-64 248.1 165 70.3
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 6.2e-64 248.1 164 72.6
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 8.2e-64 247.7 162 75.3
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-63 246.5 159 74.8
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-63 246.5 161 73.9
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 2.6e-62 242.7 155 74.8
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 6.5e-61 238.0 164 69.5
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 8.4e-61 237.7 166 69.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.1e-60 237.3 161 70.8
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 9.3e-60 234.2 163 69.9
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.2e-59 233.8 164 68.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.8e-58 229.9 164 65.9
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 3.1e-55 219.2 176 65.3
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.5e-54 216.9 161 68.3
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 2.9e-53 212.6 117 87.2
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 2.9e-53 212.6 117 87.2
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 7.2e-52 208.0 118 84.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 4.6e-51 205.3 132 76.5
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 2.4e-47 193.0 117 78.6
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.3e-47 191.8 117 76.1
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.4e-46 189.1 117 81.2
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.5e-45 184.5 117 75.2
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 2.1e-43 179.9 182 48.9
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.6e-38 163.7 118 69.5
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.0e-37 158.7 98 75.5
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 6.5e-37 158.3 161 49.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.5e-36 156.4 106 71.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.5e-36 155.2 101 74.3
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-32 144.1 95 75.8
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 7.5e-25 118.2 114 54.4
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.4e-23 113.2 60 83.3
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 3.5e-22 109.4 153 36.6
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 7.7e-22 108.2 120 45.8
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.5e-20 104.0 117 48.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.1e-19 98.6 129 42.6
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.4e-17 92.8 157 38.2
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.3e-16 90.9 45 95.6
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 3.1e-15 86.3 45 93.3
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-15 85.9 88 53.4
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.0e-13 81.3 43 88.4
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.1e-12 77.8 65 63.1
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.6e-11 73.9 43 83.7
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 9.2e-07 58.2 35 74.3
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 3.5e-06 56.2 36 77.8


User provided reference genes

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