Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 1.9e-254 882.1 483 100.0
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 1.2e-179 633.6 441 78.9
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 6.0e-179 631.3 441 79.6
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 3.0e-178 629.0 431 80.3
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 2.5e-177 625.9 441 76.9
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 6.2e-176 621.3 441 77.8
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 1.4e-175 620.2 441 77.6
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 6.8e-175 617.8 441 76.6
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 1.5e-174 616.7 459 71.7
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 9.9e-174 614.0 441 75.5
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 6.4e-173 611.3 441 74.6
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 1.4e-172 610.1 473 71.5
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 7.1e-172 607.8 441 75.5
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.1e-171 606.3 441 75.3
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 3.5e-171 605.5 440 75.2
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 3.5e-171 605.5 442 73.5
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 7.8e-171 604.4 436 75.2
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 2.3e-170 602.8 440 74.3
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.0e-170 602.4 441 76.2
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 3.9e-170 602.1 442 71.9
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 1.5e-169 600.1 441 76.0
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 4.3e-169 598.6 442 74.4
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 2.1e-168 596.3 441 74.6
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 4.7e-168 595.1 447 73.4
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 2.4e-167 592.8 441 75.7
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 9.0e-167 590.9 441 75.7
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 1.5e-166 590.1 441 73.7
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 2.6e-166 589.3 436 73.4
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 2.2e-165 586.3 438 75.1
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 2.2e-165 586.3 436 73.9
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 4.9e-165 585.1 441 74.6
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 8.4e-165 584.3 444 71.4
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.4e-164 583.6 465 72.5
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 3.2e-164 582.4 441 74.1
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.2e-163 580.5 441 73.9
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 3.5e-163 578.9 440 72.0
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 6.0e-163 578.2 476 70.8
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 2.3e-162 576.2 440 74.1
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 3.0e-162 575.9 440 73.6
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 6.6e-162 574.7 440 72.5
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 1.1e-161 573.9 441 65.5
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 1.9e-161 573.2 436 72.7
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 2.5e-161 572.8 436 70.2
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 5.6e-161 571.6 436 70.4
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 1.6e-160 570.1 436 70.9
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 1.6e-160 570.1 466 68.7
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 2.1e-160 569.7 436 71.8
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 2.8e-160 569.3 464 70.7
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 4.8e-160 568.5 436 71.8
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 1.1e-159 567.4 440 73.9
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 1.1e-159 567.4 440 73.2
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 1.4e-159 567.0 441 73.9
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 3.1e-159 565.8 437 74.1
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 4.0e-159 565.5 440 72.3
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 1.2e-158 563.9 440 73.2
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 3.4e-158 562.4 436 71.3
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 5.8e-158 561.6 441 69.4
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 1.3e-157 560.5 441 69.4
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 3.8e-157 558.9 436 70.9
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 3.8e-157 558.9 440 71.1
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 4.9e-157 558.5 441 69.2
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 5.4e-156 555.1 441 71.2
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 6.0e-155 551.6 440 70.5
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 1.0e-154 550.8 441 71.2
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 1.8e-154 550.1 473 64.9
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 5.1e-154 548.5 497 62.4
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 5.1e-154 548.5 436 70.6
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 2.5e-153 546.2 440 72.3
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 5.6e-153 545.0 473 65.5
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 5.6e-153 545.0 560 58.8
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 1.6e-152 543.5 448 69.4
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 6.2e-152 541.6 441 68.7
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 1.1e-151 540.8 477 65.2
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 1.8e-151 540.0 430 72.1
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 3.4e-150 535.8 440 70.7
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 8.4e-149 531.2 472 63.1
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 4.6e-147 525.4 441 65.8
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 7.9e-147 524.6 436 68.8
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 9.6e-145 517.7 473 62.4
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 1.3e-144 517.3 443 65.7
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 4.8e-144 515.4 450 66.9
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 5.3e-143 511.9 441 65.1
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 3.4e-142 509.2 443 65.5
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 4.2e-140 502.3 443 63.9
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 9.3e-140 501.1 443 63.7
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 1.6e-139 500.4 443 63.7
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 7.4e-137 491.5 443 63.4
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 2.2e-136 490.0 441 63.5
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 3.7e-136 489.2 443 63.2
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 1.1e-135 487.6 441 62.6
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 1.1e-135 487.6 435 64.6
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.4e-135 486.5 443 62.8
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 1.2e-134 484.2 443 62.3
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 3.4e-134 482.6 442 63.1
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.3e-130 469.9 435 65.5
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 1.1e-129 467.6 463 55.7
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 1.0e-125 454.5 433 55.0
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 6.5e-125 451.8 463 53.6
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 1.0e-122 444.5 445 60.2
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 1.3e-120 437.6 344 63.4
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 7.0e-119 431.8 452 57.1
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.8e-117 426.0 428 55.1
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 8.5e-117 424.9 447 57.7
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.7e-115 419.9 445 58.0
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 2.3e-114 416.8 437 57.7
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 5.7e-113 412.1 442 52.7
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 5.0e-109 399.1 446 56.5
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 6.5e-109 398.7 432 54.6
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 2.5e-108 396.7 452 54.0
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 7.5e-105 385.2 446 55.6
CiPaw.13G133200 Carya illinoinensis HOM05D004145 ORTHO05D004879 1.7e-104 384.0 272 78.7
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 1.8e-103 380.6 429 57.8
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.5e-100 370.9 428 54.9
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 5.5e-100 369.0 444 52.0
MBI12_g33070_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 2.0e-97 360.5 248 71.4
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 5.4e-95 352.4 447 50.6
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 8.6e-93 345.1 425 48.7
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 6.3e-88 328.9 446 49.3
MD17G1228000 Malus domestica HOM05D004145 ORTHO05D004879 4.3e-84 316.2 255 73.7
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 8.0e-83 312.0 376 55.1
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.1e-79 301.6 342 50.9
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 7.8e-78 295.4 434 47.2
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 5.6e-76 289.3 440 41.4
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 3.7e-72 276.6 312 50.0
Haze_00048 Corylus avellana HOM05D000222 ORTHO05D004879 1.4e-71 274.6 215 66.5
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 1.2e-70 271.6 339 50.7
Lsat_1_v5_gn_3_33301 Lactuca sativa HOM05D004145 ORTHO05D004879 2.7e-70 270.4 251 59.0
BcaB06g28815 Brassica carinata HOM05D004145 ORTHO05D004879 4.0e-66 256.5 225 70.7
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 8.9e-66 255.4 465 41.3
GSVIVG01032341001 Vitis vinifera HOM05D004145 ORTHO05D004879 4.6e-62 243.0 186 67.7
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 2.3e-61 240.7 360 39.4
BolC4t27888H Brassica oleracea HOM05D004145 ORTHO05D004879 1.6e-59 234.6 280 48.2
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 1.7e-56 224.6 510 37.5
Psat0s1551g0320 Pisum sativum HOM05D004145 ORTHO05D004879 1.3e-53 214.9 187 71.1
GSVIVG01032295001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.3e-53 214.9 204 58.8
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 1.3e-51 208.4 199 54.3
SEGI_02297 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 4.9e-48 196.4 150 62.7
GSVIVG01032326001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.5e-38 163.7 84 85.7
HPP92_016860 Vanilla planifolia HOM05D004145 ORTHO05D004879 6.0e-38 162.9 150 58.7
GSVIVG01032340001 Vitis vinifera HOM05D004145 ORTHO05D004879 7.9e-38 162.5 84 84.5
Sabra19G0021200 Salix brachista HOM05D004145 ORTHO05D004879 4.3e-36 156.8 163 54.0
Dinv01337 Davidia involucrata HOM05D004145 ORTHO05D004879 1.8e-34 151.4 79 91.1
Psat0s1551g0280 Pisum sativum HOM05D004145 ORTHO05D004879 5.8e-33 146.4 125 63.2
CARHR178030 Cardamine hirsuta HOM05D004145 ORTHO05D004879 3.5e-30 137.1 113 65.5
HPP92_016859 Vanilla planifolia HOM05D004145 ORTHO05D004879 7.4e-28 129.4 273 37.0
TPR.G28883 Trifolium pratense HOM05D004145 ORTHO05D004879 8.2e-27 125.9 105 64.8
GSVIVG01032294001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.4e-26 125.2 64 85.9
TPR.G33351 Trifolium pratense HOM05D004145 ORTHO05D004879 9.0e-26 122.5 74 77.0
SEGI_16626 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 1.5e-25 121.7 100 60.0
MBI12_g33072_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 2.2e-19 101.3 64 76.6
CARHR177970 Cardamine hirsuta HOM05D004145 ORTHO05D004879 5.9e-17 93.2 157 40.8
Psat0s2291g0040 Pisum sativum HOM05D004145 ORTHO05D004879 1.0e-16 92.4 88 51.1
Eucgr.L03047 Eucalyptus grandis HOM05D004145 ORTHO05D004879 7.9e-14 82.8 57 71.9
TAR365G0486 Trochodendron aralioides HOM05D004145 ORTHO05D004879 1.2e-09 68.9 45 73.3
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 2.1e-06 58.2 41 61.0
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 6.1e-06 56.6 41 58.5


User provided reference genes

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