Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 5.3e-144 514.2 242 100.0
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 9.8e-130 466.8 242 88.4
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 9.8e-130 466.8 242 89.3
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.3e-129 466.5 242 88.4
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 2.2e-129 465.7 242 88.0
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 4.8e-129 464.5 242 89.7
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.1e-128 463.4 242 88.0
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.4e-128 463.0 242 88.8
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.8e-128 462.6 242 88.0
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.1e-128 461.8 240 89.6
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.1e-128 461.8 242 88.8
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.4e-128 461.1 242 87.2
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 9.1e-128 460.3 240 88.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.6e-127 459.5 240 87.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.6e-127 459.5 242 86.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.7e-127 458.8 242 87.2
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.7e-127 458.8 240 87.1
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 2.7e-127 458.8 242 86.8
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 5.9e-127 457.6 238 87.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 5.9e-127 457.6 242 86.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.0e-126 456.8 240 87.9
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.0e-126 456.8 242 87.2
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.0e-126 456.8 242 88.4
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.3e-126 456.4 240 87.5
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.7e-126 456.1 242 86.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.3e-126 455.7 242 86.8
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.3e-126 455.7 240 87.5
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.9e-126 455.3 242 86.4
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 3.8e-126 454.9 241 86.7
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 3.8e-126 454.9 242 87.6
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 6.6e-126 454.1 242 85.5
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 6.6e-126 454.1 242 86.4
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.1e-125 453.4 242 85.5
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.5e-125 453.0 242 86.4
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.9e-125 452.6 242 86.8
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.9e-125 452.6 240 86.7
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.5e-125 452.2 242 85.1
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.2e-125 451.4 242 86.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 4.2e-125 451.4 242 86.0
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.2e-125 451.4 242 86.4
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 7.2e-125 450.7 240 86.2
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.2e-125 450.7 242 86.0
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 9.5e-125 450.3 242 86.0
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.6e-124 449.5 242 84.3
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.1e-124 449.1 242 85.1
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 2.8e-124 448.7 242 85.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 3.6e-124 448.4 242 86.8
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 4.7e-124 448.0 242 85.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.1e-124 447.6 242 85.5
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.1e-124 447.6 242 85.5
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 6.1e-124 447.6 238 85.7
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 6.1e-124 447.6 242 84.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 8.0e-124 447.2 242 85.5
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 8.0e-124 447.2 242 85.1
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.0e-123 446.8 240 86.7
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.0e-123 446.8 242 84.7
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.0e-123 446.8 242 85.5
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.4e-123 446.4 242 84.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-123 446.0 242 84.7
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.3e-123 445.7 240 86.2
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 4.0e-123 444.9 240 86.2
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 4.0e-123 444.9 242 83.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.0e-123 444.9 242 85.5
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-123 444.5 242 84.3
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-123 444.5 242 84.3
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 8.9e-123 443.7 242 84.7
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.9e-123 443.7 240 85.0
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.9e-123 443.7 242 84.3
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 8.9e-123 443.7 242 84.7
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.5e-122 443.0 240 85.8
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.5e-122 443.0 242 84.7
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.5e-122 443.0 233 86.7
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.5e-122 443.0 232 87.5
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-122 442.6 240 85.8
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 2.0e-122 442.6 242 85.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.6e-122 442.2 237 86.9
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-122 442.2 242 83.9
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.6e-122 442.2 241 85.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-122 441.8 240 85.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 4.4e-122 441.4 240 85.8
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.7e-122 441.0 243 84.4
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.7e-122 441.0 242 84.3
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 5.7e-122 441.0 243 82.7
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 7.5e-122 440.7 242 83.9
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 9.8e-122 440.3 242 83.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.3e-121 439.9 239 84.9
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.7e-121 439.5 242 84.3
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.7e-121 439.5 235 86.0
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.7e-121 439.5 235 86.0
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.2e-121 439.1 264 78.4
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.7e-121 438.3 242 83.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.1e-120 436.8 242 83.1
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.1e-120 436.8 242 83.1
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-120 436.8 242 83.1
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.1e-120 436.8 242 83.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.1e-120 436.8 242 83.1
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.8e-120 436.0 242 83.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.4e-120 435.6 242 82.2
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 3.2e-120 435.3 242 83.1
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 4.1e-120 434.9 242 82.6
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 7.0e-120 434.1 242 82.6
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 7.0e-120 434.1 241 84.6
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 7.0e-120 434.1 241 84.6
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.2e-119 433.3 241 83.8
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.2e-119 433.3 238 83.6
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.7e-119 432.2 240 82.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 3.5e-119 431.8 242 83.9
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 3.5e-119 431.8 242 83.9
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.0e-118 430.3 240 82.1
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.7e-118 429.5 243 82.3
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.3e-118 429.1 240 82.1
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.9e-118 428.7 242 81.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.3e-117 424.9 242 81.4
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 5.6e-117 424.5 242 81.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 9.5e-117 423.7 219 87.2
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.8e-115 419.5 242 83.1
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.3e-115 419.1 217 87.1
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.8e-114 413.7 214 87.4
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 9.8e-114 413.7 221 84.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 9.8e-114 413.7 242 77.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 9.8e-114 413.7 237 81.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.2e-113 412.5 236 79.7
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.9e-113 412.1 238 79.0
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.9e-113 412.1 221 84.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 3.2e-112 408.7 235 79.6
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.1e-112 408.3 235 80.0
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 7.0e-112 407.5 220 84.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.8e-107 392.9 208 85.6
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.4e-104 383.3 242 75.6
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.9e-104 382.9 235 74.0
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.1e-101 373.6 233 73.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.2e-100 370.2 218 77.1
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.6e-95 353.2 231 69.7
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 3.4e-90 335.5 207 76.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.1e-88 330.5 237 66.7
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.5e-82 310.1 233 62.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.2e-80 302.0 162 83.3
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 8.7e-78 294.3 151 87.4
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-72 276.2 218 65.1
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.3e-70 270.4 158 79.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.4e-67 259.6 148 78.4
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.3e-60 237.3 126 85.7
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.6e-58 229.6 119 88.2
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 7.6e-58 228.0 123 84.6
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.9e-57 226.1 119 85.7
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 5.5e-56 221.9 127 77.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.8e-52 209.5 147 66.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.7e-31 139.8 69 88.4
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.4e-13 79.3 49 71.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 5.9e-10 68.9 60 61.7


User provided reference genes

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