Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A661T32 Lonicera japonica HOM05D000059 ORTHO05D048432 6.5e-34 146.7 70 100.0
Actinidia12137 Actinidia chinensis HOM05D000059 ORTHO05D009759 3.9e-15 84.3 74 52.7
QL04p050714 Quercus lobata HOM05D000059 ORTHO05D009759 8.2e-13 76.6 39 89.7
CSS0013163 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D009759 1.8e-12 75.5 51 72.5
CSS0038335 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D009759 1.8e-12 75.5 51 72.5
DCAR_023134 Daucus carota HOM05D000059 ORTHO05D009759 1.8e-12 75.5 48 79.2
CiPaw.13G047900 Carya illinoinensis HOM05D000059 ORTHO05D009759 4.1e-12 74.3 41 80.5
Dinv02047 Davidia involucrata HOM05D000059 ORTHO05D009759 4.1e-12 74.3 51 72.5
Hma1.2p1_0233F.1_g098010 Hydrangea macrophylla HOM05D000059 ORTHO05D009759 9.1e-12 73.2 51 68.6
Ciclev10000859m.g Citrus clementina HOM05D000059 ORTHO05D009759 1.2e-11 72.8 78 50.0
Rhsim07G0072600 Rhododendron simsii HOM05D000059 ORTHO05D009759 2.6e-11 71.6 51 72.5
Haze_03390 Corylus avellana HOM05D000059 ORTHO05D009759 4.5e-11 70.9 78 50.0
Haze_03394 Corylus avellana HOM05D000059 ORTHO05D009759 4.5e-11 70.9 78 50.0
vmacro13792 Vaccinium macrocarpon HOM05D000059 ORTHO05D009759 7.7e-11 70.1 41 78.0
GSVIVG01027353001 Vitis vinifera HOM05D000059 ORTHO05D009759 1.0e-10 69.7 43 72.1
TAR633G1052 Trochodendron aralioides HOM05D000059 ORTHO05D009759 2.2e-10 68.6 51 68.6
SalBow6G6738 Salvia bowleyana HOM05D000059 ORTHO05D009759 2.9e-10 68.2 43 69.8
Nitab4.5_0006602g0020 Nicotiana tabacum HOM05D000059 ORTHO05D009759 3.8e-10 67.8 43 69.8
PGR142G1020 Punica granatum HOM05D000059 ORTHO05D009759 3.8e-10 67.8 43 69.8
arahy.Tifrunner.gnm1.ann1.DT2ZPD Arachis hypogaea HOM05D000059 ORTHO05D009759 6.5e-10 67.0 43 69.8
CANSAT11G0801 Cannabis sativa HOM05D000059 ORTHO05D009759 6.5e-10 67.0 41 73.2
DCAR_011576 Daucus carota HOM05D000059 ORTHO05D009759 8.5e-10 66.6 41 75.6
Migut.N01872 Erythranthe guttata HOM05D000059 ORTHO05D009759 8.5e-10 66.6 43 69.8
MBI19_g28108_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D009759 8.5e-10 66.6 41 73.2
Aqoxy1G04298 Aquilegia oxysepala HOM05D000059 ORTHO05D009759 1.1e-09 66.2 41 70.7
arahy.Tifrunner.gnm1.ann1.R5AJY0 Arachis hypogaea HOM05D000059 ORTHO05D009759 1.1e-09 66.2 43 69.8
Potri.008G011541 Populus trichocarpa HOM05D000059 ORTHO05D009759 1.1e-09 66.2 45 66.7
Cpa.g.sc54.31 Carica papaya HOM05D000059 ORTHO05D009759 1.5e-09 65.9 43 65.1
HanXRQChr09g0258271 Helianthus annuus HOM05D000059 ORTHO05D009759 1.5e-09 65.9 43 65.1
Eucgr.G02633 Eucalyptus grandis HOM05D000059 ORTHO05D009759 1.9e-09 65.5 43 69.8
Lj3g0014051 Lotus japonicus HOM05D000059 ORTHO05D009759 1.9e-09 65.5 43 65.1
Manes.10G063500 Manihot esculenta HOM05D000059 ORTHO05D009759 2.5e-09 65.1 43 69.8
Oeu013046.1 Olea europaea HOM05D000059 ORTHO05D009759 2.5e-09 65.1 43 67.4
Peaxi162Scf00647g00529 Petunia axillaris HOM05D000059 ORTHO05D009759 2.5e-09 65.1 43 69.8
Potri.010G247400 Populus trichocarpa HOM05D000059 ORTHO05D009759 2.5e-09 65.1 45 64.4
Sabra10G0192800 Salix brachista HOM05D000059 ORTHO05D009759 2.5e-09 65.1 45 64.4
Atru.chr12.1136 Acer truncatum HOM05D000059 ORTHO05D009759 4.2e-09 64.3 51 64.7
Glyma.08G227200 Glycine max HOM05D000059 ORTHO05D009759 4.2e-09 64.3 43 65.1
MD07G1053900 Malus domestica HOM05D000059 ORTHO05D009759 4.2e-09 64.3 51 64.7
TPR.G25025 Trifolium pratense HOM05D000059 ORTHO05D009759 4.2e-09 64.3 40 70.0
Cc08_g09570 Coffea canephora HOM05D000059 ORTHO05D009759 5.5e-09 63.9 43 69.8
FvH4_5g27182 Fragaria vesca HOM05D000059 ORTHO05D009759 5.5e-09 63.9 51 64.7
FAN08G3269 Fragaria x ananassa HOM05D000059 ORTHO05D009759 5.5e-09 63.9 51 64.7
FAN18G2260 Fragaria x ananassa HOM05D000059 ORTHO05D009759 5.5e-09 63.9 51 64.7
Nitab4.5_0002687g0090 Nicotiana tabacum HOM05D000059 ORTHO05D009759 5.5e-09 63.9 43 67.4
Psat4g141840 Pisum sativum HOM05D000059 ORTHO05D048432 5.5e-09 63.9 40 70.0
Psat4g141880 Pisum sativum HOM05D000059 ORTHO05D009759 5.5e-09 63.9 40 70.0
RcHm_v2.0_Chr7g0218291 Rosa chinensis HOM05D000059 ORTHO05D009759 5.5e-09 63.9 51 64.7
VMungo1127G1077 Vigna mungo HOM05D000059 ORTHO05D009759 5.5e-09 63.9 43 65.1
Cfa010436 Carpinus fangiana HOM05D000059 ORTHO05D009759 7.2e-09 63.5 51 66.7
Phvul.011G186900 Phaseolus vulgaris HOM05D000059 ORTHO05D009759 7.2e-09 63.5 43 62.8
Ca_24119_v3 Cicer arietinum L. HOM05D000059 ORTHO05D009759 9.4e-09 63.2 40 70.0
Sed0015296 Sechium edule HOM05D000059 ORTHO05D009759 9.4e-09 63.2 41 68.3
ECA232G4524 Erigeron canadensis HOM05D002501 ORTHO05D009759 1.2e-08 62.8 43 62.8
Lsat_1_v5_gn_8_117641 Lactuca sativa HOM05D000059 ORTHO05D009759 1.2e-08 62.8 43 62.8
Zm00001eb200350 Zea mays HOM05D000059 ORTHO05D009759 1.2e-08 62.8 45 64.4
ClCG08G008620 Citrullus lanatus HOM05D000059 ORTHO05D009759 1.6e-08 62.4 41 68.3
CsaV3_6G004640 Cucumis sativus L. HOM05D000059 ORTHO05D009759 1.6e-08 62.4 41 65.9
PSO339G3396 Papaver somniferum HOM05D000059 ORTHO05D009759 1.6e-08 62.4 41 65.9
PSO384G3320 Papaver somniferum HOM05D000059 ORTHO05D009759 1.6e-08 62.4 41 65.9
Duzib114G0502 Durio zibethinus HOM05D000059 ORTHO05D009759 2.1e-08 62.0 51 62.7
Gohir.A06G170800 Gossypium hirsutum HOM05D000059 ORTHO05D009759 2.1e-08 62.0 51 62.7
Gohir.D06G178600 Gossypium hirsutum HOM05D000059 ORTHO05D009759 2.1e-08 62.0 51 62.7
Gorai.N006600 Gossypium raimondii HOM05D000059 ORTHO05D009759 2.1e-08 62.0 51 62.7
ATR0307G069 Amborella trichopoda HOM05D000059 ORTHO05D009759 2.7e-08 61.6 41 68.3
COL.COLO4_07153 Corchorus olitorius HOM05D000059 ORTHO05D009759 2.7e-08 61.6 51 60.8
Lalb_Chr19g0132601 Lupinus albus HOM05D000059 ORTHO05D009759 2.7e-08 61.6 43 60.5
CAN.G134.45 Capsicum annuum HOM05D000059 ORTHO05D009759 3.6e-08 61.2 43 65.1
Glyma.15G222300 Glycine max HOM05D000059 ORTHO05D009759 3.6e-08 61.2 43 62.8
Os05g0489900 Oryza sativa ssp. japonica HOM05D000059 ORTHO05D009759 4.7e-08 60.8 43 62.8
Medtr8g043970 Medicago truncatula HOM05D000059 ORTHO05D009759 6.1e-08 60.5 40 67.5
Solyc01g096820.4 Solanum lycopersicum HOM05D000059 ORTHO05D009759 6.1e-08 60.5 40 67.5
Sopen01g040520 Solanum pennellii HOM05D000059 ORTHO05D009759 6.1e-08 60.5 40 67.5
PGSC0003DMG400027527 Solanum tuberosum HOM05D000059 ORTHO05D009759 6.1e-08 60.5 40 67.5
MBI05_g04121_MAGBIO Magnolia biondii HOM05D001811 ORTHO05D001738 8.0e-08 60.1 38 68.4
MELO3C019932.2 Cucumis melo HOM05D000059 ORTHO05D009759 1.0e-07 59.7 37 70.3
Nn7g37296 Nelumbo nucifera HOM05D000059 ORTHO05D009759 1.8e-07 58.9 38 71.1
TWI38G0951 Tripterygium wilfordii HOM05D000059 ORTHO05D009759 1.8e-07 58.9 43 58.1
HPP92_017883 Vanilla planifolia HOM05D000059 ORTHO05D009759 1.8e-07 58.9 41 63.4
HPP92_017887 Vanilla planifolia HOM05D000059 ORTHO05D009759 1.8e-07 58.9 41 63.4
SEGI_19769 Sequoiadendron giganteum HOM05D000059 ORTHO05D009759 3.0e-07 58.2 43 60.5
Thecc.10G130400 Theobroma cacao HOM05D000059 ORTHO05D009759 4.0e-07 57.8 51 58.8


User provided reference genes

Program Settings