Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 9.1e-116 420.2 210 100.0
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 8.3e-77 290.8 172 83.7
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 8.3e-77 290.8 172 83.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.4e-76 290.0 171 85.4
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 4.1e-76 288.5 173 84.4
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 5.4e-76 288.1 171 83.6
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 7.1e-76 287.7 171 84.2
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.2e-75 287.0 171 83.0
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.2e-75 287.0 177 82.5
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.6e-75 286.6 171 84.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.1e-75 286.2 171 83.0
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.7e-75 285.8 171 83.0
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 4.6e-75 285.0 172 82.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 6.0e-75 284.6 171 82.5
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 6.0e-75 284.6 171 83.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 7.8e-75 284.3 171 82.5
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 7.8e-75 284.3 174 81.6
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.8e-75 284.3 174 81.6
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 7.8e-75 284.3 174 81.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 7.8e-75 284.3 174 82.2
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.0e-74 283.9 171 83.6
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.0e-74 283.9 171 81.9
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.3e-74 283.5 171 82.5
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.7e-74 283.1 171 82.5
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.7e-74 283.1 171 81.9
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.7e-74 283.1 171 83.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.7e-74 283.1 171 81.9
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.3e-74 282.7 171 82.5
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 2.3e-74 282.7 174 81.0
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.3e-74 282.7 171 81.3
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.0e-74 282.3 171 82.5
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 3.9e-74 282.0 171 81.3
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 3.9e-74 282.0 172 81.4
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 3.9e-74 282.0 171 80.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.1e-74 281.6 170 82.4
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 6.6e-74 281.2 171 81.9
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 6.6e-74 281.2 171 80.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 6.6e-74 281.2 171 81.3
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 8.6e-74 280.8 171 80.7
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 8.6e-74 280.8 171 81.3
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 8.6e-74 280.8 171 81.3
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 8.6e-74 280.8 171 81.3
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 8.6e-74 280.8 175 81.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.1e-73 280.4 171 81.3
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.1e-73 280.4 171 81.9
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.1e-73 280.4 171 81.9
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.1e-73 280.4 180 78.9
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.1e-73 280.4 180 78.9
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.5e-73 280.0 171 80.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.5e-73 280.0 171 82.5
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.9e-73 279.6 170 81.8
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.9e-73 279.6 170 81.8
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.9e-73 279.6 171 80.7
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.9e-73 279.6 171 80.7
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.9e-73 279.6 171 80.7
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.9e-73 279.6 171 80.7
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.3e-73 278.9 170 80.6
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.3e-73 278.9 170 80.0
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 3.3e-73 278.9 171 81.9
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.3e-73 278.9 171 80.1
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.3e-73 278.9 171 80.1
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 3.3e-73 278.9 171 80.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 4.3e-73 278.5 171 80.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 7.3e-73 277.7 171 80.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 7.3e-73 277.7 171 79.5
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.5e-73 277.3 170 82.4
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.2e-72 276.9 171 78.4
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.6e-72 276.6 171 80.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.6e-72 276.6 171 79.5
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.6e-72 276.6 172 78.5
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.1e-72 276.2 174 78.2
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.1e-72 276.2 183 77.0
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.8e-72 275.8 171 79.5
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.1e-71 273.9 171 77.8
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-71 273.9 192 72.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.1e-71 273.9 171 78.4
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.1e-71 273.9 198 71.2
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.1e-71 273.9 183 76.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 4.0e-71 271.9 171 77.2
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 4.0e-71 271.9 173 77.5
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 5.2e-71 271.6 170 78.2
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 6.8e-71 271.2 171 77.2
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.5e-70 270.0 172 78.5
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.5e-70 270.0 171 77.8
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.5e-70 270.0 171 77.2
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.4e-70 268.9 171 77.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.7e-69 266.5 165 80.0
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.2e-69 266.2 170 75.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.9e-69 265.8 171 75.4
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.9e-69 265.8 170 75.9
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 4.9e-69 265.0 160 83.8
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 6.4e-69 264.6 170 75.3
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 6.4e-69 264.6 171 74.3
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 8.3e-69 264.2 171 74.3
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 8.3e-69 264.2 170 75.3
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-68 263.8 171 74.9
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-68 263.8 170 74.7
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.1e-68 263.8 198 68.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.9e-68 263.1 178 74.7
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 3.2e-68 262.3 212 65.6
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 7.1e-68 261.2 170 75.3
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 7.1e-68 261.2 167 78.4
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 4.6e-67 258.5 171 73.1
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.9e-66 255.4 171 70.8
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 8.6e-66 254.2 160 78.8
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.6e-66 254.2 171 71.3
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 5.6e-65 251.5 160 78.8
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 7.3e-65 251.1 171 70.2
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 2.8e-64 249.2 171 69.6
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 5.8e-62 241.5 169 68.6
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 7.6e-62 241.1 171 66.7
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.3e-61 240.4 161 75.2
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-61 240.0 170 67.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.9e-60 236.5 209 60.8
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.2e-52 208.8 153 65.4
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.1e-48 196.4 140 72.1
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.4e-47 193.0 170 58.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-45 187.2 164 56.1
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.1e-43 179.9 115 78.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.7e-40 169.1 161 50.3
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.4e-39 167.2 112 75.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.9e-39 164.9 123 65.0
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 2.0e-38 163.3 79 96.2
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.0e-38 163.3 115 72.2
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 3.4e-38 162.5 106 73.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-37 160.6 79 93.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.7e-37 160.2 82 89.0
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.9e-37 159.5 88 85.2
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.4e-36 157.1 81 87.7
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 3.7e-32 142.5 72 90.3
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 4.1e-31 139.0 69 91.3
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 9.0e-31 137.9 111 66.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.0e-30 136.7 74 90.5
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 3.4e-30 136.0 69 91.3
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 4.5e-30 135.6 74 89.2
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-29 134.0 74 87.8
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.3e-28 127.9 155 43.9
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 7.9e-27 124.8 68 85.3
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 7.9e-27 124.8 68 85.3
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.3e-26 123.2 68 83.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 9.7e-25 117.9 67 83.6
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.4e-23 113.2 81 70.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 2.3e-18 96.7 51 84.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.2e-16 90.1 48 81.2
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.8e-15 87.0 69 68.1
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 4.2e-12 75.9 40 85.0
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 4.2e-12 75.9 40 85.0
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 4.2e-12 75.9 40 85.0
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 4.2e-12 75.9 40 85.0
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 9.4e-12 74.7 37 89.2


User provided reference genes

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