Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 0.0e+00 1517.3 758 100.0
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 0.0e+00 1335.9 767 87.6
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 0.0e+00 1320.1 767 87.0
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 0.0e+00 1307.0 764 86.0
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 0.0e+00 1305.4 764 86.4
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 0.0e+00 1301.2 767 85.0
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 0.0e+00 1295.0 768 84.6
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 0.0e+00 1294.6 768 84.9
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 0.0e+00 1290.0 767 84.5
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 0.0e+00 1290.0 767 84.5
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 0.0e+00 1286.6 767 84.5
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 0.0e+00 1286.2 767 83.6
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1286.2 767 83.6
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 0.0e+00 1285.4 767 84.1
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 0.0e+00 1285.0 767 83.6
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1284.6 767 83.4
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 0.0e+00 1284.6 768 83.7
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 0.0e+00 1283.1 767 83.4
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 0.0e+00 1280.8 767 83.6
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 0.0e+00 1280.8 767 83.2
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 0.0e+00 1278.5 769 83.4
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 0.0e+00 1276.5 767 83.6
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 0.0e+00 1275.0 767 84.0
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 0.0e+00 1274.2 767 83.2
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 0.0e+00 1273.5 768 82.8
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 0.0e+00 1268.8 767 84.4
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 0.0e+00 1267.3 767 83.1
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 0.0e+00 1266.9 768 82.7
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 0.0e+00 1258.8 767 81.7
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 0.0e+00 1258.4 767 83.1
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 0.0e+00 1258.4 767 82.5
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 0.0e+00 1258.4 764 82.7
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 0.0e+00 1258.0 767 82.3
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 0.0e+00 1257.7 773 82.0
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1257.7 749 83.6
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 0.0e+00 1256.9 764 82.9
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 0.0e+00 1253.4 767 81.6
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 0.0e+00 1251.9 764 82.5
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 0.0e+00 1248.4 764 82.2
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 0.0e+00 1247.6 767 81.0
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 0.0e+00 1246.5 783 80.2
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 0.0e+00 1246.5 767 82.3
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1246.1 852 75.1
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1245.3 749 83.0
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 0.0e+00 1243.4 768 81.1
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 0.0e+00 1243.0 764 82.3
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 0.0e+00 1239.9 764 81.8
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 0.0e+00 1239.6 764 81.8
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 0.0e+00 1239.2 808 78.8
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 0.0e+00 1237.6 811 78.2
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 0.0e+00 1237.6 775 82.1
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 0.0e+00 1237.2 786 81.6
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 0.0e+00 1234.6 767 80.4
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 0.0e+00 1232.6 774 80.1
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 0.0e+00 1231.1 764 81.0
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 0.0e+00 1227.6 767 81.2
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 0.0e+00 1226.5 707 87.1
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 0.0e+00 1221.5 767 80.3
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 0.0e+00 1211.4 955 68.0
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 0.0e+00 1211.1 768 79.0
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 0.0e+00 1208.0 859 72.6
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 0.0e+00 1204.5 767 77.7
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 0.0e+00 1203.7 711 85.2
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 0.0e+00 1200.7 767 77.8
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 0.0e+00 1200.7 767 77.4
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 0.0e+00 1196.4 767 77.3
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 0.0e+00 1188.3 767 79.3
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 0.0e+00 1187.9 767 77.4
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 0.0e+00 1187.6 767 76.8
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 0.0e+00 1187.6 767 77.7
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 0.0e+00 1184.1 768 76.4
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 0.0e+00 1184.1 768 76.4
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 0.0e+00 1183.7 750 79.5
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 0.0e+00 1183.7 768 76.4
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 0.0e+00 1180.2 767 76.1
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 0.0e+00 1177.5 768 76.3
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 0.0e+00 1176.4 768 77.5
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 0.0e+00 1171.0 767 75.9
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 0.0e+00 1170.6 767 75.7
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 0.0e+00 1169.8 767 75.7
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 0.0e+00 1166.4 762 76.2
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 0.0e+00 1164.4 767 75.7
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 0.0e+00 1163.3 767 76.0
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 0.0e+00 1157.1 768 75.7
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 0.0e+00 1127.9 824 70.8
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 0.0e+00 1127.5 772 73.7
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 0.0e+00 1097.8 752 74.1
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 0.0e+00 1095.1 719 76.5
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 0.0e+00 1080.9 764 74.0
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 4.7e-311 1070.8 774 70.7
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 1.8e-310 1068.9 774 70.8
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 1.0e-305 1053.1 769 70.2
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 1.6e-303 1045.8 768 68.6
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.4e-302 1042.7 633 82.5
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 1.3e-300 1036.2 768 68.5
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.5e-298 1029.2 769 67.4
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 2.2e-297 1025.4 767 69.9
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 1.6e-295 1019.2 768 67.6
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 2.7e-295 1018.5 639 78.4
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 1.4e-294 1016.1 614 83.1
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 1.4e-291 1006.1 783 64.1
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 4.5e-290 1001.1 783 64.0
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 7.7e-290 1000.3 768 66.7
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.2e-289 998.8 767 69.0
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 3.8e-289 998.0 610 82.1
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.2e-282 976.5 768 66.1
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 7.5e-277 957.2 769 62.8
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.1e-275 953.4 745 66.8
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 1.0e-273 946.8 786 61.2
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.5e-272 943.0 770 61.3
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.7e-265 919.5 769 60.2
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.2e-261 906.7 770 60.8
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.6e-258 896.3 639 70.6
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 2.1e-255 885.9 769 59.3
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 1.5e-253 879.8 674 66.9
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 1.7e-244 849.7 1310 41.5
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 9.6e-232 807.4 612 65.8
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 8.1e-231 804.3 768 55.7
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 1.3e-228 797.0 776 52.7
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 1.9e-219 766.5 542 73.4
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 1.7e-212 743.4 773 49.2
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 6.7e-201 704.9 566 61.5
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 1.1e-190 671.0 805 48.0
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.5e-189 667.2 475 70.3
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.3e-169 600.1 769 45.8
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 5.2e-169 599.0 635 55.3
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 2.0e-168 597.0 460 65.7
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.1e-147 528.1 453 62.3
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.1e-146 523.9 448 62.9
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 5.7e-144 515.8 373 66.8
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.0e-140 502.7 517 55.5
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 4.3e-139 499.6 505 53.3
Cre19.g751347 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 1.8e-137 494.2 507 48.1
Haze_02955 Corylus avellana HOM05D003429 ORTHO05D003873 1.1e-129 468.4 260 90.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 3.0e-116 423.7 306 72.5
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 2.1e-109 401.0 329 63.8
Psat6g086600 Pisum sativum HOM05D003429 ORTHO05D003873 2.8e-106 390.6 264 75.8
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.1e-105 388.7 288 67.0
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 1.4e-89 335.1 235 68.9
SHI11320 Sapria himalayana HOM05D003429 ORTHO05D003873 1.3e-76 292.0 195 75.9
Psat6g056200 Pisum sativum HOM05D003429 ORTHO05D003873 2.5e-70 271.2 189 73.0
Ca_28163_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 3.2e-70 270.8 232 61.2
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 4.6e-69 266.9 247 58.3
Psat6g086480 Pisum sativum HOM05D003429 ORTHO05D003873 7.9e-69 266.2 238 57.6
CARHR206820 Cardamine hirsuta HOM05D003429 ORTHO05D003873 5.7e-67 260.0 225 60.9
Glyma.10G105100 Glycine max HOM05D003429 ORTHO05D003873 2.4e-65 254.6 156 80.1
EL10Ac3g07336 Beta vulgaris HOM05D003429 ORTHO05D003873 7.7e-64 249.6 379 41.7
vmacro07589 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 4.8e-58 230.3 134 84.3
GSVIVG01025857001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.8e-58 230.3 136 83.1
Cpa.g.sc33.146 Carica papaya HOM05D003429 ORTHO05D003873 8.2e-58 229.6 134 86.6
arahy.Tifrunner.gnm1.ann1.W9SEAP Arachis hypogaea HOM05D003429 ORTHO05D003873 5.3e-57 226.9 131 85.5
VMungo0720G0230 Vigna mungo HOM05D003429 ORTHO05D003873 3.1e-41 174.5 156 59.6
Rhsim09G0101900 Rhododendron simsii HOM05D003429 ORTHO05D003873 7.2e-38 163.3 235 46.4
Lsat_1_v5_gn_2_32281 Lactuca sativa HOM05D003429 ORTHO05D003873 9.5e-38 162.9 145 62.1
SEGI_27821 Sequoiadendron giganteum HOM05D003429 ORTHO05D003873 2.6e-35 154.8 89 84.3
FvH4_7g04520 Fragaria vesca HOM05D003429 ORTHO05D003873 1.1e-33 149.4 95 80.0
Nitab4.5_0000211g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.7e-32 144.8 82 91.5
Nitab4.5_0002094g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.7e-32 144.8 82 91.5
Actinidia13983 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.9e-32 143.7 104 63.5
Actinidia14027 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.6e-29 135.6 151 49.7
QL04p023522 Quercus lobata HOM05D003429 ORTHO05D003873 3.5e-24 117.9 67 86.6
Cpa.g.sc33.147 Carica papaya HOM05D003429 ORTHO05D003873 3.3e-22 111.3 62 87.1
SEGI_15232 Sequoiadendron giganteum HOM05D003429 ORTHO05D003873 9.5e-22 109.8 62 77.4
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.8e-20 103.6 100 58.0
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.8e-20 103.6 100 57.0
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 8.9e-20 103.2 106 56.6
Oeu055890.1 Olea europaea HOM05D003429 ORTHO05D003873 3.7e-18 97.8 92 53.3
Ca_14866_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 2.0e-16 92.0 90 52.2
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 7.8e-16 90.1 89 56.2
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.9e-14 85.5 94 53.2
CAN.G114.9 Capsicum annuum HOM05D003429 ORTHO05D003873 3.3e-14 84.7 178 35.4
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.2e-13 82.8 94 47.9
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.3e-10 72.8 75 48.0
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.9e-10 71.6 112 42.9
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.9e-10 71.6 112 42.9
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 6.4e-10 70.5 40 82.5
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 7.1e-09 67.0 356 23.3
BcaC06g32584 Brassica carinata HOM05D003429 ORTHO05D003873 1.6e-08 65.9 38 76.3
QL07p010213 Quercus lobata HOM05D002614 ORTHO05D000004 1.6e-08 65.9 34 82.4
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 3.9e-07 61.2 353 22.9


User provided reference genes

Program Settings