Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 0.0e+00 1218.8 865 100.0
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 5.2e-117 426.4 356 64.3
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 7.1e-114 416.0 351 63.0
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 6.0e-113 412.9 357 61.1
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.3e-112 411.0 354 60.5
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.0e-112 410.6 357 61.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 3.3e-111 407.1 356 61.2
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 5.6e-111 406.4 348 61.5
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.1e-109 402.1 357 60.8
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.8e-109 401.4 318 63.8
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.2e-108 398.7 354 58.8
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.5e-108 398.3 357 60.8
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.5e-108 398.3 355 59.2
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 2.0e-108 397.9 307 65.8
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.4e-108 397.1 356 59.3
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 3.4e-108 397.1 356 58.1
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.4e-108 397.1 367 57.2
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 7.6e-108 396.0 352 59.7
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 7.6e-108 396.0 374 56.4
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.7e-107 394.8 352 59.9
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.7e-107 394.8 336 61.9
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.2e-107 394.4 375 55.7
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.9e-107 394.0 379 54.9
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.9e-107 394.0 325 63.7
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 8.4e-107 392.5 354 58.8
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 1.1e-106 392.1 356 58.1
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.9e-106 391.3 351 59.8
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.9e-106 391.3 358 58.9
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.2e-106 390.6 351 59.5
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 4.2e-106 390.2 325 61.5
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 7.1e-106 389.4 314 64.3
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 9.3e-106 389.0 353 55.8
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 2.1e-105 387.9 352 59.4
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 4.6e-105 386.7 363 58.4
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 4.6e-105 386.7 351 59.5
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.0e-105 386.3 353 57.8
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.0e-104 385.6 360 58.6
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.3e-104 385.2 362 56.6
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.0e-104 384.0 385 55.3
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 6.6e-104 382.9 351 59.5
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 6.6e-104 382.9 333 59.8
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 8.7e-104 382.5 357 59.1
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.5e-103 381.7 375 55.7
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.9e-103 381.3 351 59.3
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 2.5e-103 380.9 327 60.6
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 1.3e-102 378.6 315 60.3
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.6e-102 378.3 326 57.7
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 1.6e-102 378.3 350 58.0
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 2.1e-102 377.9 358 58.4
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.8e-102 377.5 351 59.0
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.6e-102 377.1 351 58.1
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 3.6e-102 377.1 336 58.6
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 4.0e-101 373.6 926 32.8
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 6.9e-101 372.9 351 57.3
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 9.0e-101 372.5 334 58.4
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 9.0e-101 372.5 326 57.4
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 9.0e-101 372.5 354 59.0
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 2.0e-100 371.3 359 58.5
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 3.4e-100 370.5 354 57.9
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 7.6e-100 369.4 361 57.9
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 7.6e-100 369.4 370 56.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 9.9e-100 369.0 955 32.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 9.9e-100 369.0 343 58.9
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.9e-99 367.5 353 57.2
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.4e-98 365.2 378 53.7
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 2.4e-98 364.4 335 59.1
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 7.1e-98 362.8 371 54.2
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 2.7e-97 360.9 359 54.3
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.7e-97 360.9 353 56.7
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 4.6e-97 360.1 309 59.2
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 7.9e-97 359.4 336 58.3
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.0e-96 359.0 368 53.5
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.7e-96 358.2 327 58.4
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.7e-96 358.2 306 58.8
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.7e-96 358.2 334 58.1
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 8.7e-96 355.9 351 53.3
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 4.3e-95 353.6 312 57.7
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 2.1e-94 351.3 334 55.1
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.8e-94 350.9 344 54.7
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.6e-94 350.5 315 57.5
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.1e-93 349.0 283 64.0
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 4.0e-93 347.1 278 64.4
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 2.6e-92 344.4 349 53.0
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 5.8e-92 343.2 357 52.1
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 3.8e-91 340.5 362 51.9
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.1e-90 339.0 353 52.7
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.4e-90 337.8 332 55.1
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 7.1e-90 336.3 271 62.4
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.1e-89 334.7 335 52.8
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.8e-85 321.6 330 53.0
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 4.0e-85 320.5 355 53.2
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.0e-83 315.8 331 52.3
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.9e-83 314.3 366 48.1
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 6.0e-81 306.6 359 49.9
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 4.8e-70 270.4 350 45.7
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.3e-67 262.3 228 60.1
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 5.5e-66 256.9 334 45.2
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 6.7e-64 250.0 225 55.6
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 7.4e-63 246.5 225 58.2
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.6e-60 238.0 299 45.8
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.0e-56 226.1 398 37.9
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 3.0e-56 224.6 294 42.9
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.1e-55 222.6 296 42.6
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.5e-50 205.7 211 52.6
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.0e-48 197.6 171 60.2
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.2e-46 191.8 244 47.1
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-45 188.3 170 59.4
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 7.7e-44 183.3 320 38.8
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 2.2e-38 165.2 188 45.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.2e-38 165.2 129 62.8
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 9.1e-37 159.8 153 51.0
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 7.7e-36 156.8 233 37.8
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 5.2e-32 144.1 155 55.5
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 6.8e-32 143.7 151 52.3
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.7e-31 140.6 184 45.7
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.0e-28 132.1 130 53.8
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.2e-25 122.9 202 34.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 8.9e-24 116.7 131 54.2
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 8.9e-24 116.7 131 54.2
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.4e-23 114.8 128 52.3
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 4.9e-22 110.9 89 60.7
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 4.6e-20 104.4 62 77.4
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.8e-16 92.4 67 59.7
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 4.4e-15 87.8 52 76.9
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 4.6e-12 77.8 47 72.3
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.3e-11 75.5 110 40.9
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 5.0e-11 74.3 46 73.9
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 6.6e-11 73.9 96 36.5
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.7e-09 67.8 78 47.4
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 4.4e-07 61.2 219 31.1


User provided reference genes

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