Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 8.1e-121 437.2 235 100.0
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.8e-104 380.9 262 79.8
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.4e-103 378.6 262 78.2
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.8e-103 377.9 262 78.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.8e-103 377.9 262 78.6
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 5.8e-103 377.9 262 78.6
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 9.9e-103 377.1 262 77.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 9.9e-103 377.1 262 77.9
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-102 376.7 262 77.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.3e-102 376.7 262 77.9
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-102 375.6 262 79.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.8e-102 375.2 262 78.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.8e-102 375.2 262 78.2
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.8e-102 375.2 262 77.5
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 6.4e-102 374.4 262 78.6
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.9e-101 372.9 262 78.6
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.9e-101 372.9 262 77.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.4e-101 372.5 262 76.7
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 3.2e-101 372.1 262 77.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.2e-101 371.7 262 78.6
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 4.2e-101 371.7 262 77.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.2e-101 371.7 262 77.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.1e-101 370.9 262 77.9
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 9.3e-101 370.5 262 77.5
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 9.3e-101 370.5 262 77.1
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.2e-100 370.2 262 77.1
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 2.1e-100 369.4 262 76.3
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.5e-100 368.6 262 77.1
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.6e-100 368.2 261 77.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 7.8e-100 367.5 262 76.7
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.0e-99 367.1 262 76.3
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.0e-99 367.1 262 77.5
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.7e-99 366.3 262 77.1
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.3e-99 365.9 262 77.1
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.3e-99 365.9 262 75.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.3e-99 365.9 262 75.6
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.3e-99 365.9 262 75.2
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-99 365.5 262 75.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-99 365.5 262 76.0
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.0e-99 365.5 262 75.6
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.0e-99 365.5 262 78.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.9e-99 365.2 262 75.2
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 5.1e-99 364.8 262 76.7
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 6.6e-99 364.4 262 76.7
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 8.7e-99 364.0 262 75.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.5e-98 363.2 262 76.7
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.5e-98 363.2 262 74.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.9e-98 362.8 262 77.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.5e-98 362.5 263 76.4
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.5e-98 362.5 262 74.4
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.5e-98 362.5 262 76.3
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.5e-98 362.5 262 76.3
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 5.6e-98 361.3 262 76.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 5.6e-98 361.3 262 75.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.6e-98 361.3 262 75.6
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 7.3e-98 360.9 262 74.8
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 9.6e-98 360.5 262 74.8
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.3e-97 360.1 262 75.2
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-97 360.1 262 76.3
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.3e-97 360.1 262 74.8
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.3e-97 360.1 262 74.8
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.3e-97 360.1 262 74.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.3e-97 360.1 262 75.2
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.6e-97 359.8 263 76.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.6e-97 359.8 262 76.3
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.1e-97 359.4 262 74.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.1e-97 359.4 263 75.7
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.8e-97 359.0 262 75.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.8e-97 358.2 262 76.0
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 4.8e-97 358.2 262 74.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.2e-97 357.8 262 74.4
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 6.2e-97 357.8 262 74.0
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 6.2e-97 357.8 262 74.4
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 8.1e-97 357.5 262 75.6
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 8.1e-97 357.5 262 76.0
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.1e-96 357.1 262 74.4
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.8e-96 356.3 262 73.3
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.4e-96 355.9 262 73.3
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.0e-96 355.1 263 74.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 4.0e-96 355.1 262 73.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 5.3e-96 354.8 262 74.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 9.0e-96 354.0 262 74.8
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 9.0e-96 354.0 262 74.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 9.0e-96 354.0 262 74.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.5e-95 353.2 262 74.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.4e-95 352.1 259 75.3
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 3.4e-95 352.1 262 72.9
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.7e-94 349.7 264 73.9
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.2e-94 349.4 253 74.7
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 8.4e-94 347.4 262 72.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.1e-93 347.1 262 72.1
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.4e-93 346.7 262 72.5
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.9e-93 346.3 262 73.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.2e-93 345.5 264 71.6
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 4.2e-93 345.1 262 72.1
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 4.2e-93 345.1 262 72.1
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 4.2e-93 345.1 262 72.1
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 4.2e-93 345.1 262 72.1
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.1e-93 344.4 262 71.8
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 7.1e-93 344.4 262 71.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-92 343.6 262 71.8
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-92 343.6 262 71.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.2e-92 343.6 262 71.8
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.2e-92 343.6 262 71.8
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.2e-92 343.6 262 72.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.6e-92 343.2 264 73.1
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-92 342.8 262 71.8
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 2.1e-92 342.8 262 71.8
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.7e-92 342.4 262 71.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 7.9e-92 340.9 262 71.4
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 7.9e-92 340.9 262 71.4
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 7.9e-92 340.9 247 77.3
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.3e-91 339.3 262 71.0
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 2.3e-91 339.3 247 76.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.3e-91 339.3 260 73.5
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 3.0e-91 339.0 263 71.5
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 3.0e-91 339.0 263 71.5
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 3.0e-91 339.0 263 71.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.1e-91 338.2 263 71.9
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 6.6e-91 337.8 262 72.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-90 336.7 263 71.1
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.5e-90 335.9 270 70.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.4e-88 330.1 270 69.3
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.1e-88 328.9 238 76.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 4.0e-88 328.6 263 71.1
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.2e-87 327.0 263 70.7
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.5e-87 326.6 253 72.3
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.7e-86 323.2 263 70.3
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 5.5e-85 318.2 248 71.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 2.7e-84 315.8 263 68.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 4.6e-84 315.1 263 69.6
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.8e-83 313.2 263 68.4
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.6e-82 308.1 264 67.4
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.7e-81 305.4 229 75.1
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.2e-81 304.7 249 67.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.7e-78 296.6 218 75.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.2e-78 296.2 235 69.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.9e-78 295.0 234 69.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.2e-77 292.0 226 70.4
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.2e-77 292.0 214 74.3
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.6e-76 290.0 263 62.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.1e-76 289.7 223 71.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 3.9e-75 285.4 209 75.6
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.7e-75 284.6 263 62.0
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.4e-72 276.9 219 68.0
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 4.1e-72 275.4 219 68.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.2e-70 269.6 239 65.3
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.9e-70 269.2 267 57.7
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 7.4e-66 254.6 236 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.8e-65 252.7 218 63.8
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.3e-62 243.8 236 58.1
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.4e-59 233.8 247 57.9
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.5e-58 230.3 208 61.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.5e-58 229.6 262 56.1
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 7.4e-58 228.0 204 65.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 3.4e-55 219.2 270 51.1
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 7.7e-55 218.0 212 59.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.2e-53 212.6 220 59.5
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-49 200.7 138 79.0
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.5e-47 192.6 118 86.4
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-41 173.3 244 45.1
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.3e-41 171.8 245 45.3
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.8e-40 170.2 164 61.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.7e-36 156.4 156 59.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 6.1e-36 155.2 130 64.6
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.6e-31 140.6 120 65.8
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.5e-29 133.3 96 70.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.3e-21 106.3 126 51.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.2e-16 89.7 54 87.0


User provided reference genes

Program Settings