Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 5.8e-147 524.2 274 100.0
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 6.4e-77 291.6 249 66.3
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.2e-72 277.3 252 62.3
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.8e-71 273.5 254 61.8
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 4.0e-71 272.3 254 61.0
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 4.0e-71 272.3 254 61.8
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 4.0e-71 272.3 250 61.2
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 6.8e-71 271.6 254 61.4
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 6.8e-71 271.6 254 61.8
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.2e-70 270.8 254 60.6
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.2e-70 270.8 254 61.0
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.5e-70 270.4 254 61.4
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-70 270.4 251 61.0
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 3.4e-70 269.2 252 59.9
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.2e-69 266.5 254 60.2
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 2.9e-69 266.2 252 61.1
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.9e-69 266.2 254 60.2
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.9e-69 266.2 254 59.4
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.7e-69 265.8 252 59.5
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.1e-68 264.2 254 59.1
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.1e-68 264.2 252 59.1
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.9e-68 263.5 254 60.6
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 2.4e-68 263.1 254 59.4
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.1e-68 262.3 256 57.8
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 7.1e-68 261.5 252 58.7
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.2e-67 260.8 250 60.4
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 2.1e-67 260.0 250 59.6
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 2.7e-67 259.6 254 58.3
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 3.5e-67 259.2 254 58.3
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 3.5e-67 259.2 249 59.8
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 7.8e-67 258.1 254 58.7
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.0e-66 257.7 252 58.7
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.0e-66 257.7 249 57.0
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.7e-66 256.9 268 54.5
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 1.7e-66 256.9 249 56.6
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 2.3e-66 256.5 254 58.3
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 3.0e-66 256.1 250 58.4
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 3.9e-66 255.8 256 57.8
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 3.9e-66 255.8 254 57.9
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 5.1e-66 255.4 250 57.6
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 6.6e-66 255.0 254 58.3
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 6.6e-66 255.0 249 56.6
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 8.6e-66 254.6 254 56.7
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 8.6e-66 254.6 250 57.6
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.1e-65 254.2 249 56.6
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.5e-65 253.8 253 58.9
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.5e-65 253.1 249 57.0
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 3.3e-65 252.7 249 56.2
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 4.3e-65 252.3 254 57.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 9.5e-65 251.1 254 57.5
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 2.1e-64 250.0 271 55.0
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.1e-64 250.0 254 56.3
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 2.1e-64 250.0 248 57.3
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 2.1e-64 250.0 250 58.0
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 2.8e-64 249.6 254 56.7
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 3.6e-64 249.2 268 54.9
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 4.7e-64 248.8 254 55.9
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 3.1e-63 246.1 254 55.1
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 3.1e-63 246.1 249 57.0
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.1e-63 246.1 249 57.0
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.1e-63 246.1 249 57.0
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 4.0e-63 245.7 249 57.0
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 5.2e-63 245.4 250 56.4
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 6.8e-63 245.0 252 54.8
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 8.9e-63 244.6 244 57.0
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 8.9e-63 244.6 283 52.7
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.2e-62 244.2 249 57.4
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.4e-62 242.7 254 55.9
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 4.4e-62 242.3 254 55.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.4e-62 242.3 246 56.5
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 7.6e-62 241.5 250 54.4
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 7.6e-62 241.5 267 54.3
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 9.9e-62 241.1 259 54.4
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.2e-61 240.0 254 55.1
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.2e-61 240.0 254 55.1
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.9e-61 239.6 254 55.1
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.9e-61 239.6 254 55.1
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.8e-61 239.2 254 55.1
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 8.4e-61 238.0 254 54.7
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.9e-60 236.9 254 55.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.9e-60 236.9 284 52.8
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.1e-59 233.4 381 42.5
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 4.6e-59 232.3 252 54.0
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.3e-58 230.7 254 52.4
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 3.9e-58 229.2 254 53.5
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 5.1e-58 228.8 253 51.0
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 6.6e-58 228.4 250 52.8
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 6.6e-58 228.4 254 51.2
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 6.6e-58 228.4 254 51.6
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 6.6e-58 228.4 254 50.8
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 6.6e-58 228.4 249 53.0
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 8.6e-58 228.0 254 51.6
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 8.6e-58 228.0 254 51.6
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 8.6e-58 228.0 248 51.2
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.5e-57 227.3 250 51.6
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.5e-57 227.3 253 51.4
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.5e-57 226.5 254 52.4
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 5.6e-57 225.3 250 50.8
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.6e-56 223.8 252 52.4
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 2.1e-56 223.4 254 51.6
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 3.6e-56 222.6 254 50.8
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 3.6e-56 222.6 254 50.8
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 8.1e-56 221.5 254 50.4
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 2.4e-55 219.9 253 49.4
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 6.9e-55 218.4 249 51.0
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 9.0e-55 218.0 250 50.8
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 2.9e-53 213.0 254 48.8
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 3.8e-53 212.6 254 48.8
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 3.8e-53 212.6 254 48.8
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 6.4e-53 211.8 345 42.9
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.1e-52 211.1 254 48.8
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.4e-52 210.7 254 48.4
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.4e-52 210.7 254 48.0
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-52 210.3 254 48.4
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-52 210.3 254 48.4
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.9e-52 210.3 254 48.4
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.9e-52 210.3 254 48.4
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.9e-52 210.3 165 66.1
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 2.4e-52 209.9 254 48.0
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 4.2e-52 209.1 254 48.4
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 4.2e-52 209.1 254 48.0
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 5.4e-52 208.8 254 47.2
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 9.3e-52 208.0 254 47.2
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 1.6e-51 207.2 253 49.4
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 3.5e-51 206.1 254 47.2
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 3.5e-51 206.1 254 47.2
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 6.0e-51 205.3 254 46.9
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.0e-50 204.5 254 46.9
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.0e-50 204.5 254 46.9
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.0e-50 204.5 254 45.7
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.0e-50 204.5 253 49.4
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.3e-50 203.4 253 49.0
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 3.9e-50 202.6 245 49.0
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.1e-49 201.1 254 45.7
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.1e-49 201.1 254 45.7
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-49 200.7 253 48.6
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.3e-49 198.4 253 47.8
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 9.6e-49 198.0 254 49.2
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 6.2e-48 195.3 260 47.3
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 5.3e-47 192.2 253 43.9
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 9.0e-47 191.4 293 41.6
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.5e-46 189.1 263 48.3
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 6.0e-43 178.7 236 47.9
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.0e-42 177.9 250 43.6
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 2.1e-40 170.2 123 71.5
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 1.1e-39 167.9 123 70.7
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 9.0e-39 164.9 250 42.8
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 4.5e-38 162.5 173 53.2
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.3e-37 161.0 190 52.6
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 4.9e-37 159.1 149 61.1
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 6.0e-35 152.1 174 51.7
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 3.9e-34 149.4 254 40.6
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 4.8e-32 142.5 248 36.7
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 6.2e-32 142.1 248 36.7
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 8.2e-32 141.7 247 37.7
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 4.2e-28 129.4 249 33.7
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.5e-27 126.3 158 49.4
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.8e-26 124.0 268 34.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 3.7e-24 116.3 171 42.1
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 2.6e-22 110.2 246 30.9
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.5e-20 103.6 249 29.3
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 2.7e-19 100.1 218 33.5
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.6e-19 99.4 70 71.4
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 1.0e-18 98.2 118 50.0
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.4e-18 97.8 70 68.6
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.4e-18 97.8 74 64.9
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.0e-18 96.7 70 68.6
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 6.7e-18 95.5 249 28.5
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.1e-17 94.7 149 42.3
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.8e-16 89.4 118 46.6
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 7.7e-14 82.0 65 64.6
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.5e-13 79.0 82 52.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.5e-12 75.9 82 51.2
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 3.6e-11 73.2 55 63.6
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 3.9e-10 69.7 57 63.2
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.5e-09 67.8 117 35.0
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 5.7e-09 65.9 88 46.6
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 6.3e-08 62.4 241 24.9


User provided reference genes

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