Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A626G14 Lonicera japonica HOM05D000073 ORTHO05D234278 3.0e-13 77.0 33 100.0
GSVIVG01032007001 Vitis vinifera HOM05D000073 ORTHO05D000033 1.9e-07 57.8 30 80.0
CiPaw.14G124900 Carya illinoinensis HOM05D000073 ORTHO05D000033 3.2e-07 57.0 30 80.0
Lj3g0014806 Lotus japonicus HOM05D000073 ORTHO05D000033 3.2e-07 57.0 30 76.7
Medtr3g026280 Medicago truncatula HOM05D000073 ORTHO05D000033 3.2e-07 57.0 30 76.7
Hund22082 Selenicereus undatus HOM05D000073 ORTHO05D000033 3.2e-07 57.0 30 80.0
Psat7g232960 Pisum sativum HOM05D000073 ORTHO05D000033 5.4e-07 56.2 30 80.0
GSVIVG01032018001 Vitis vinifera HOM05D000073 ORTHO05D000033 5.4e-07 56.2 30 73.3
CiPaw.14G125200 Carya illinoinensis HOM05D000073 ORTHO05D000033 7.1e-07 55.8 28 78.6
Dinv43916 Davidia involucrata HOM05D000073 ORTHO05D000033 7.1e-07 55.8 28 78.6
FvH4_3g43500 Fragaria vesca HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
FAN11G2084 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
FAN16G1872 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
FAN17G1022 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
FAN21G2114 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
FAN25G2702 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
Glyma.09G003200 Glycine max HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
Glyma.12G240000 Glycine max HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
PSO170G1409 Papaver somniferum HOM05D000073 ORTHO05D000033 7.1e-07 55.8 32 65.6
Hund21662 Selenicereus undatus HOM05D000073 ORTHO05D000033 7.1e-07 55.8 30 76.7
Lj3g0006832 Lotus japonicus HOM05D000073 ORTHO05D000033 9.3e-07 55.5 28 78.6
Potri.001G015100 Populus trichocarpa HOM05D000073 ORTHO05D000033 9.3e-07 55.5 30 73.3
Sc07g0001270 Simmondsia chinensis HOM05D000073 ORTHO05D000033 9.3e-07 55.5 30 76.7
CANSAT54G2401 Cannabis sativa HOM05D000073 ORTHO05D000033 1.2e-06 55.1 28 78.6
Ca_19922_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 76.7
Lj3g0003949 Lotus japonicus HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 76.7
Medtr4g023000 Medicago truncatula HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 76.7
Phvul.011G056300 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 70.0
Prupe.6G019200 Prunus persica HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 73.3
TPR.G30614 Trifolium pratense HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 76.7
TAR369G0243 Trochodendron aralioides HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 73.3
TAR633G0088 Trochodendron aralioides HOM05D000073 ORTHO05D000033 1.2e-06 55.1 30 73.3
arahy.Tifrunner.gnm1.ann1.39HWVH Arachis hypogaea HOM05D000073 ORTHO05D000033 1.6e-06 54.7 27 85.2
Ciclev10017801m.g Citrus clementina HOM05D000073 ORTHO05D000033 1.6e-06 54.7 29 72.4
Cc02_g11520 Coffea canephora HOM05D000073 ORTHO05D000033 1.6e-06 54.7 29 79.3
Lalb_Chr14g0372371 Lupinus albus HOM05D000073 ORTHO05D000033 1.6e-06 54.7 28 78.6
Lalb_Chr19g0132021 Lupinus albus HOM05D000073 ORTHO05D000033 1.6e-06 54.7 28 78.6
Lalb_Chr24g0396921 Lupinus albus HOM05D000073 ORTHO05D000033 1.6e-06 54.7 28 82.1
Prupe.6G145100 Prunus persica HOM05D000073 ORTHO05D000033 1.6e-06 54.7 30 73.3
QL01p006410 Quercus lobata HOM05D000073 ORTHO05D000033 1.6e-06 54.7 28 78.6
QL01p006542 Quercus lobata HOM05D000073 ORTHO05D000033 1.6e-06 54.7 28 78.6
GSVIVG01025344001 Vitis vinifera HOM05D000073 ORTHO05D000033 1.6e-06 54.7 28 78.6
CiPaw.10G122800 Carya illinoinensis HOM05D000073 ORTHO05D000033 2.1e-06 54.3 28 78.6
AUR62027503 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.1e-06 54.3 29 75.9
Haze_23040 Corylus avellana HOM05D000073 ORTHO05D000033 2.1e-06 54.3 28 75.0
Lj3g0021503 Lotus japonicus HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 73.3
Lj3g0022458 Lotus japonicus HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 73.3
Lj4g0000106 Lotus japonicus HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 73.3
MD05G1105800 Malus domestica HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 70.0
Medtr2g098540 Medicago truncatula HOM05D000073 ORTHO05D000033 2.1e-06 54.3 28 75.0
PSO017G6678 Papaver somniferum HOM05D000073 ORTHO05D000033 2.1e-06 54.3 32 65.6
PSO170G5570 Papaver somniferum HOM05D000073 ORTHO05D000033 2.1e-06 54.3 32 65.6
Phvul.005G150600 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 2.1e-06 54.3 28 75.0
Prupe.7G080500 Prunus persica HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 70.0
PGR102G2764 Punica granatum HOM05D000073 ORTHO05D000033 2.1e-06 54.3 28 71.4
SHI30519 Sapria himalayana HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 70.0
Thecc.09G221800 Theobroma cacao HOM05D000073 ORTHO05D000033 2.1e-06 54.3 30 73.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.1e-06 54.3 28 75.0
GSVIVG01025343001 Vitis vinifera HOM05D000073 ORTHO05D000033 2.1e-06 54.3 28 78.6
arahy.Tifrunner.gnm1.ann1.CF8GRF Arachis hypogaea HOM05D000073 ORTHO05D000033 2.7e-06 53.9 30 76.7
AUR62019243 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.7e-06 53.9 29 75.9
Ca_05618_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 2.7e-06 53.9 28 78.6
FAN21G1867 Fragaria x ananassa HOM05D000073 ORTHO05D000033 2.7e-06 53.9 30 73.3
Phvul.011G056400 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 2.7e-06 53.9 29 72.4
arahy.Tifrunner.gnm1.ann1.424QFW Arachis hypogaea HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
arahy.Tifrunner.gnm1.ann1.H3KMIQ Arachis hypogaea HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 76.7
arahy.Tifrunner.gnm1.ann1.KEPW1K Arachis hypogaea HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
AUR62000070 Chenopodium quinoa HOM05D000073 ORTHO05D000033 3.5e-06 53.5 28 78.6
AUR62019244 Chenopodium quinoa HOM05D000073 ORTHO05D000033 3.5e-06 53.5 28 78.6
Lj5g0013105 Lotus japonicus HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
MD00G1145200 Malus domestica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 70.0
MD00G1145300 Malus domestica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 70.0
MD03G1021500 Malus domestica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
MD05G1105900 Malus domestica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 70.0
MD12G1211500 Malus domestica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 70.0
MD15G1374300 Malus domestica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 70.0
Nn7g36043 Nelumbo nucifera HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
Oeu037353.1 Olea europaea HOM05D000073 ORTHO05D000033 3.5e-06 53.5 28 78.6
Prupe.7G105400 Prunus persica HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 70.0
PGR102G2148 Punica granatum HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
PGR102G2887 Punica granatum HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
Sabra03G0153900 Salix brachista HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
Sabra03G0156400 Salix brachista HOM05D000073 ORTHO05D000033 3.5e-06 53.5 30 73.3
arahy.Tifrunner.gnm1.ann1.4Z6VDH Arachis hypogaea HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 66.7
arahy.Tifrunner.gnm1.ann1.IEIY3V Arachis hypogaea HOM05D000073 ORTHO05D000033 4.6e-06 53.1 27 81.5
arahy.Tifrunner.gnm1.ann1.UEEX8A Arachis hypogaea HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 66.7
Cfa009677 Carpinus fangiana HOM05D000073 ORTHO05D000033 4.6e-06 53.1 28 75.0
AUR62000065 Chenopodium quinoa HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
AUR62019239 Chenopodium quinoa HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
Ca_20588_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
Ciclev10017777m.g Citrus clementina HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
Glyma.12G053900 Glycine max HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
Gohir.A06G117500 Gossypium hirsutum HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
Gohir.D06G112250 Gossypium hirsutum HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
Gorai.010G128100 Gossypium raimondii HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
Lalb_Chr03g0026181 Lupinus albus HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 73.3
MD00G1105800 Malus domestica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 28 75.0
MD03G1204800 Malus domestica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
MD05G1114900 Malus domestica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 66.7
MD11G1024000 Malus domestica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
Medtr2g098520 Medicago truncatula HOM05D000073 ORTHO05D000033 4.6e-06 53.1 27 81.5
Phvul.011G214300 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 4.6e-06 53.1 28 75.0
Prupe.1G014500 Prunus persica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
Prupe.4G165800 Prunus persica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
Prupe.6G018900 Prunus persica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 28 75.0
Prupe.6G020100 Prunus persica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
Prupe.6G088200 Prunus persica HOM05D000073 ORTHO05D000033 4.6e-06 53.1 30 70.0
PGR102G0355 Punica granatum HOM05D000073 ORTHO05D000033 4.6e-06 53.1 28 82.1
arahy.Tifrunner.gnm1.ann1.M8S3TB Arachis hypogaea HOM05D000073 ORTHO05D000033 6.0e-06 52.8 30 66.7
CiPaw.12G005200 Carya illinoinensis HOM05D000073 ORTHO05D000033 6.0e-06 52.8 29 65.5
CiPaw.12G005800 Carya illinoinensis HOM05D000073 ORTHO05D000033 6.0e-06 52.8 29 65.5
Eucgr.B03654 Eucalyptus grandis HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
FAN17G3040 Fragaria x ananassa HOM05D000073 ORTHO05D000033 6.0e-06 52.8 30 73.3
Gohir.A10G014300 Gossypium hirsutum HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
MD09G1243300 Malus domestica HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
PSO339G0024 Papaver somniferum HOM05D000073 ORTHO05D000033 6.0e-06 52.8 30 70.0
PGR042G2972 Punica granatum HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 71.4
QL01p006558 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 78.6
QL01p006880 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
QL01p007186 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
QL04p004005 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
QL04p004025 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 52.8 28 75.0
SHI30520 Sapria himalayana HOM05D000073 ORTHO05D000033 6.0e-06 52.8 30 66.7
TWI34G0009 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 6.0e-06 52.8 27 74.1
VMungo1127G0444 Vigna mungo HOM05D000073 ORTHO05D000033 6.0e-06 52.8 30 73.3
CiPaw.13G165700 Carya illinoinensis HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 66.7
AUR62000069 Chenopodium quinoa HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
Dinv15038 Davidia involucrata HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
Eucgr.B03659 Eucalyptus grandis HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
FvH4_3g43490 Fragaria vesca HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 73.3
FvH4_3g43502 Fragaria vesca HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
FvH4_3g43503 Fragaria vesca HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
FAN11G1305 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
FAN16G0410 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
FAN21G0041 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
FAN25G1353 Fragaria x ananassa HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
Glyma.12G054400 Glycine max HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
Glyma.15G031300 Glycine max HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
Lj3g0004905 Lotus japonicus HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
Lalb_Chr14g0372361 Lupinus albus HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
Manes.14G014700 Manihot esculenta HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
Prupe.6G019100 Prunus persica HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
Prupe.6G019900 Prunus persica HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
QL01p004001 Quercus lobata HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
QL04p003962 Quercus lobata HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 73.3
QL04p004242 Quercus lobata HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 73.3
RcHm_v2.0_Chr5g0077951 Rosa chinensis HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0
Sopen01g033610 Solanum pennellii HOM05D000073 ORTHO05D000033 7.8e-06 52.4 27 74.1
VMungo1127G1788 Vigna mungo HOM05D000073 ORTHO05D000033 7.8e-06 52.4 28 75.0
GSVIVG01032009001 Vitis vinifera HOM05D000073 ORTHO05D000033 7.8e-06 52.4 30 70.0


User provided reference genes

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